PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma85g00920.1
Common NameZOSMA_85G00920
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family LBD
Protein Properties Length: 238aa    MW: 24687.7 Da    PI: 6.9311
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma85g00920.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.91.1e-40261261100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v +i++lqqq+++l+ae
  Zosma85g00920.1  26 PCGACKFLRRKCVTGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLVHIPAHKRLDAVVTICYEAQARLRDPVYGCVVHIFALQQQVMNLQAE 119
                      7***********************9989****************************************************************** PP

           DUF260  94 lallkee 100
                      l++l+++
  Zosma85g00920.1 120 LSYLQAH 126
                      **99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.02725127IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-3926124IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MSASVSSGGG GGGSTGGGGS GGGGGPCGAC KFLRRKCVTG CIFAPYFDSE QGAAHFAAVH  60
KVFGASNVSK LLVHIPAHKR LDAVVTICYE AQARLRDPVY GCVVHIFALQ QQVMNLQAEL  120
SYLQAHLATL ELPSPPPPPP SHQPFSISDL PSSAATLPTS FDLSTLFLDP QTDQQQQQSP  180
WPPLPLQQQH QQMQMETGGS SSGSGGGEGD LQALARELVD RTRAAAGNLQ QPPTSSK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1619SGGGGGGSTGGGGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009400358.17e-90PREDICTED: LOB domain-containing protein 18-like
SwissprotO221313e-72LBD18_ARATH; LOB domain-containing protein 18
TrEMBLA0A0K9NL711e-172A0A0K9NL71_Z
STRINGGSMUA_Achr5P11330_0012e-89(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33463782
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.11e-69LOB domain-containing protein 18