PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma74g00830.1
Common NameZOSMA_74G00830
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family NAC
Protein Properties Length: 363aa    MW: 41872 Da    PI: 6.2047
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma74g00830.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM145.33.3e-45471842128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.......kvka.....eekewyfFskrdkkyatgkrknratksgyW 83 
                      +pGfrFhPt+ee++ +yL++kvegk++++ + i  +d+y+++Pw+Lp                 ++ke++f+++rd+ky++g+r+nr+t+sgyW
  Zosma74g00830.1  47 MPGFRFHPTEEEIIEFYLRRKVEGKPFNV-DLIFFLDLYRFDPWELPGidktqktD--MgigtvGDKELFFYVPRDRKYRNGDRPNRVTTSGYW 137
                      79***************************.99**************9546666551..144555889*************************** PP

              NAM  84 katgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      katg d+ ++s+   ++ +glkktLvfy+g+apkg +t+W+m+eyrl
  Zosma74g00830.1 138 KATGADRVIKSElnPRRPIGLKKTLVFYSGKAPKGIRTTWIMNEYRL 184
                      **********98877788***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-5046204IPR003441NAC domain
PROSITE profilePS5100551.80746205IPR003441NAC domain
PfamPF023653.7E-2348184IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MKKRDEEVEE NADRSDEITA EEITVGEQIA VDGEGEKVDK HEYDLVMPGF RFHPTEEEII  60
EFYLRRKVEG KPFNVDLIFF LDLYRFDPWE LPGIDKTQKT DMGIGTVGDK ELFFYVPRDR  120
KYRNGDRPNR VTTSGYWKAT GADRVIKSEL NPRRPIGLKK TLVFYSGKAP KGIRTTWIMN  180
EYRLPHLLVQ KLKKPEISLC RVYNRSEVGD RHYHYQYNSR LSTSSSRVKT KSTANSTVES  240
SHQKIVTRQL LNIDPLAPSN TADHEPASGN YLPKEGGEEM EFEILRPTTT TVVVDDISME  300
YMGSEHHHQD IKNYLQKSTD RFPLPDISSP SSMLQNSSQK CLSDWIPIAV DRNVSVEYYY  360
ND*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-464820519165NO APICAL MERISTEM PROTEIN
1ut4_B4e-464820519165NO APICAL MERISTEM PROTEIN
1ut7_A4e-464820519165NO APICAL MERISTEM PROTEIN
1ut7_B4e-464820519165NO APICAL MERISTEM PROTEIN
4dul_A4e-464820519165NAC domain-containing protein 19
4dul_B4e-464820519165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022861510.11e-89NAC domain-containing protein 35-like
SwissprotQ9ZVP81e-83NAC35_ARATH; NAC domain-containing protein 35
TrEMBLA0A0K9NPP10.0A0A0K9NPP1_ZOSMR; NAC domain protein
STRINGXP_008788351.14e-88(Phoenix dactylifera)
STRINGONIVA01G44740.15e-87(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28263787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.11e-84NAC domain containing protein 35
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Okajima K
    Molecular mechanism of phototropin light signaling.
    J. Plant Res., 2016. 129(2): p. 149-57
    [PMID:26815763]
  3. Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M
    Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii.
    J Phys Chem B, 2018. 122(6): p. 1801-1815
    [PMID:29355019]