PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma70g00480.1
Common NameZOSMA_70G00480
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family LBD
Protein Properties Length: 262aa    MW: 29542.8 Da    PI: 9.1441
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma70g00480.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.62.5e-304106198
           DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                      +C++C+vlr++Ca+dC+++p++     +++q++ + +++k++G++ +l+l++a+++++r+ +++sl+yeA+ r+ +P+yG vg+++++++ql+q
  Zosma70g00480.1   4 SCNGCRVLRKGCAQDCTIRPCLqwietADSQANVTLFLAKFYGRAGLLNLINAAEHHHRPFIFRSLLYEACGRIVNPIYGTVGLLWSGNWQLCQ 97 
                      6*********************9999777889************************************************************** PP

           DUF260  90 lkaelallk 98 
                      +++e++l +
  Zosma70g00480.1  98 TAVEAVLKG 106
                      ***998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.9273109IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-234103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCAQDCT IRPCLQWIET ADSQANVTLF LAKFYGRAGL LNLINAAEHH  60
HRPFIFRSLL YEACGRIVNP IYGTVGLLWS GNWQLCQTAV EAVLKGAPVI QIPPETTDET  120
ANPIPMPLLK AFDIRHVSRD HKTQQVDLHK VKVANSTRTR FKRSSKRHVI NNHDNSGNYK  180
PPIFDVHGND RRWMNLYETN KSTAIRSGQP IQTTTEDSKE DNVKLELTIG RCPISPPTDA  240
VSHSTTVDRC IELSMSDYKR F*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009395577.12e-86PREDICTED: LOB domain-containing protein 41-like
SwissprotQ9M8862e-72LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A0K9NQH30.0A0A0K9NQH3_Z
STRINGGSMUA_Achr4P06820_0012e-77(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-71LOB domain-containing protein 41