PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma66g00010.1
Common NameZOSMA_66G00010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family NAC
Protein Properties Length: 122aa    MW: 14321.6 Da    PI: 10.2922
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma66g00010.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM60.74.7e-194210954113
              NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk........kgelvglkktLvfykgra 113
                       ++ewyfFs++dkky+ g+r nra+  g+Wk+tg+dk+++ +        +++ ++++ktLvfy gr+
  Zosma66g00010.1  42 PQNEWYFFSHKDKKYPIGTRINRAMVVGFWKTTGRDKPIYLSggrnvidgGHKRIWMRKTLVFYMGRT 109
                      467**************************************9666666655555**********9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100516.5181121IPR003441NAC domain
SuperFamilySSF1019411.09E-1640111IPR003441NAC domain
PfamPF023654.0E-742109IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MGSQRYHITL TRYTYTSISI YIHTYKVPII MDVERCRIGS GPQNEWYFFS HKDKKYPIGT  60
RINRAMVVGF WKTTGRDKPI YLSGGRNVID GGHKRIWMRK TLVFYMGRTC SYWTEISLDH  120
A*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002436417.15e-31NAC domain-containing protein 43
RefseqXP_027063205.15e-31NAC domain-containing protein 76-like
RefseqXP_027119768.15e-31NAC domain-containing protein 76-like
RefseqXP_027172345.15e-31NAC domain-containing protein 76
SwissprotQ9MA171e-29SMB_ARATH; Protein SOMBRERO
TrEMBLA0A0K9NU449e-85A0A0K9NU44_ZOSMR; Uncharacterized protein
STRINGSb10g002120.12e-30(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.35e-32NAC family protein
Publications ? help Back to Top
  1. Fendrych M, et al.
    Programmed cell death controlled by ANAC033/SOMBRERO determines root cap organ size in Arabidopsis.
    Curr. Biol., 2014. 24(9): p. 931-40
    [PMID:24726156]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  3. Karve R,Suárez-Román F,Iyer-Pascuzzi AS
    The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release.
    Plant Physiol., 2016. 171(3): p. 2101-11
    [PMID:27221617]
  4. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]