PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma5g01690.1
Common NameZOSMA_5G01690
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family NAC
Protein Properties Length: 233aa    MW: 26898.1 Da    PI: 6.3569
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma5g01690.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM138.34.8e-4351362127
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                     p GfrF Pt+eelv++yL++k+e++++++e+vi+ v++y++ePw+L++     +    ++++++fF++ ++++a+g r++r+t+sgyWkatg+  
  Zosma5g01690.1   5 PCGFRFYPTEEELVSFYLRHKLENTRNDIERVIPVVEVYSFEPWQLRQvsgepN--IgKSEQCFFFCPMQQREAQGGRPTRTTASGYWKATGTPV 97 
                     89***************************99***************85344332..2356699******************************** PP

             NAM  91 evlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127
                     +v+s+  + +++g+kkt+vfy+g+ap+g kt+W m+ey+
  Zosma5g01690.1  98 RVFSSsnTVQVIGIKKTMVFYHGKAPHGMKTEWKMNEYK 136
                     ***98655567***************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-462162IPR003441NAC domain
PROSITE profilePS5100544.9834162IPR003441NAC domain
PfamPF023652.0E-225136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MSNIPCGFRF YPTEEELVSF YLRHKLENTR NDIERVIPVV EVYSFEPWQL RQVSGEPNIG  60
KSEQCFFFCP MQQREAQGGR PTRTTASGYW KATGTPVRVF SSSNTVQVIG IKKTMVFYHG  120
KAPHGMKTEW KMNEYKALRP DQDDANSFRL CNDFSLCRIY IKNGCLRSFD RRPAAATSAN  180
VTQEEHQAQE YIVEQEVDIS QHSIPSSNQG DYDDNFDPFE NMDWKRLFTS LT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-33316219168NAC domain-containing protein 19
3swm_B4e-33316219168NAC domain-containing protein 19
3swm_C4e-33316219168NAC domain-containing protein 19
3swm_D4e-33316219168NAC domain-containing protein 19
3swp_A4e-33316219168NAC domain-containing protein 19
3swp_B4e-33316219168NAC domain-containing protein 19
3swp_C4e-33316219168NAC domain-containing protein 19
3swp_D4e-33316219168NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008776160.18e-81NAC domain-containing protein 90-like
SwissprotQ9FMR33e-64NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A0K9NW771e-176A0A0K9NW77_ZOSMR; NAC domain-containing protein 90
STRINGXP_008776160.13e-80(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100538140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.11e-66NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]