PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma54g00300.1
Common NameZOSMA_54G00300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ARF
Protein Properties Length: 511aa    MW: 56605.6 Da    PI: 6.55
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma54g00300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.12.8e-22117218199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f k+lt+sd+++ g +++p+ +a+++       + ++ +  t++ +d +gr W++++iyr++++r++lt+GW+++v+ ++L +gD++vF   ++
  Zosma54g00300.1 117 FSKTLTQSDANNGGGFSVPRFCADTIlppldynQDPPVQ--TISAQDVHGRNWDFRHIYRGTPRRHLLTTGWSRYVNYKRLIAGDSIVFA--KN 206
                      88******************999999****996555555..8************************************************..77 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      se++ +++++r 
  Zosma54g00300.1 207 SEGSIFIGIRRG 218
                      99999***9986 PP

2Auxin_resp60.18.8e-21239320283
       Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl...sGtvvgvsdldpvrWpnSkWrsLk 83 
                      a  a+++ +Fevv++Pr  ++e+vvk++ ve+++++++  GmR++m +e++d +  r+   +Gt++ v+  ++     S+Wr+L+
  Zosma54g00300.1 239 AGMATMEAPFEVVFYPRR-STEYVVKASMVEESMRIPWESGMRVRMPVEGDDNAGVRTswhQGTITYVNSNNN--PIISPWRMLQ 320
                      56788999*********7.78*******************************9866554599******99544..679*****97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.45E-27113218IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-32113218IPR015300DNA-binding pseudobarrel domain
CDDcd100171.26E-19116217No hitNo description
SMARTSM010194.7E-16117219IPR003340B3 DNA binding domain
PfamPF023622.8E-20117218IPR003340B3 DNA binding domain
PROSITE profilePS5086312.238117219IPR003340B3 DNA binding domain
PfamPF065077.2E-18238320IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MTVSDLPHTH SHFIDHRLWK AIAGNVVVIP TVGSRVYYFP QGHAEHSHPV PDVSHFPLWK  60
PWSMCRVTDV NLLANLDSDE VYYKALLLPT ISTDDRIACQ DLDEKQLQGD SLKFESFSKT  120
LTQSDANNGG GFSVPRFCAD TILPPLDYNQ DPPVQTISAQ DVHGRNWDFR HIYRGTPRRH  180
LLTTGWSRYV NYKRLIAGDS IVFAKNSEGS IFIGIRRGND VLRRNSRYRV TPENAMHAAG  240
MATMEAPFEV VFYPRRSTEY VVKASMVEES MRIPWESGMR VRMPVEGDDN AGVRTSWHQG  300
TITYVNSNNN PIISPWRMLQ VAWDEPEICH NNCVSPWQVE IVPGTHIMSP YSSSFMRFSR  360
GGAGCNHNHN STVVSGMTMS LLNDEIPVGM QGARQNLSTC MFAIKPENDS GQSWYSSGNL  420
SPYVSTELNI YSPPDGSSES LSPESQSSVL ESITTPKSAS AAAAASAGTG TRSFLLFGKL  480
IQLEDPSSPT TSSACCKTCE NLTVCSCERC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-64334040388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ93YR91e-104ARFP_ARATH; Auxin response factor 16
TrEMBLA0A0K9NWH40.0A0A0K9NWH4_ZOSMR; Auxin response factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113553137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-106auxin response factor 16
Publications ? help Back to Top
  1. Yang ZB, et al.
    TAA1-regulated local auxin biosynthesis in the root-apex transition zone mediates the aluminum-induced inhibition of root growth in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2889-904
    [PMID:25052716]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  3. Zhang GZ, et al.
    Ectopic expression of UGT75D1, a glycosyltransferase preferring indole-3-butyric acid, modulates cotyledon development and stress tolerance in seed germination of Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 90(1-2): p. 77-93
    [PMID:26496910]
  4. Ye Y, et al.
    Germostatin resistance locus 1 encodes a PHD finger protein involved in auxin-mediated seed dormancy and germination.
    Plant J., 2016. 85(1): p. 3-15
    [PMID:26611158]
  5. Liu Z, et al.
    Repression of callus initiation by the miRNA-directed interaction of auxin-cytokinin in Arabidopsis thaliana.
    Plant J., 2016. 87(4): p. 391-402
    [PMID:27189514]
  6. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  7. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  8. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]