PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma52g00060.1
Common NameZOSMA_52G00060
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family NAC
Protein Properties Length: 287aa    MW: 32177.2 Da    PI: 7.6302
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma52g00060.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM104.71.2e-32421851128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra......... 77 
                      lp+G++F+Ptd+el+ e+L+ kv++++     +++ +i++++    i++++P++Lp  v+ +    +fF++ +k+y+tg+rk+r+         
  Zosma52g00060.1  42 LPAGVKFDPTDQELL-EHLEGKVRNDSqllhSHIDGFIPTLEgengICYTHPQKLP-GVNMDGLIRHFFHRPSKAYTTGTRKRRKvhtdehagi 133
                      799************.99******9997765333334544423334**********.555666778******************7566655554 PP

              NAM  78 tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                        + +W++tgk+++vl+ +g ++g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Zosma52g00060.1 134 GGETRWHKTGKTRPVLV-NGVVKGQKKILVLYtnYGKRRKPEKTSWVMHQYHL 185
                      33778************.99************6657999999*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-3735204IPR003441NAC domain
PROSITE profilePS5100531.13742204IPR003441NAC domain
PfamPF023656.1E-1543185IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MSWCNRNNDI CTDEIIVKVC PSCGYRMNNA HEQGTIQDLL GLPAGVKFDP TDQELLEHLE  60
GKVRNDSQLL HSHIDGFIPT LEGENGICYT HPQKLPGVNM DGLIRHFFHR PSKAYTTGTR  120
KRRKVHTDEH AGIGGETRWH KTGKTRPVLV NGVVKGQKKI LVLYTNYGKR RKPEKTSWVM  180
HQYHLGSDDE EKEGELVVSK VFYQTQPRQC HGKNLSVQSI FVVNQMTPTV IKDNPSVAAS  240
DNCYSTPPPP ILDYNTINGN NNNENEDGKM IAQFSLNADD GSAFLH*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020573060.11e-115NAC domain-containing protein 73-like isoform X1
SwissprotO494591e-111NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A0K9NX340.0A0A0K9NX34_ZOSMR; Putative NAC domain-containing protein 21/22
STRINGORGLA01G0213300.11e-112(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30753786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-113NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]