PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma41g00710.1
Common NameZOSMA_41G00710
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ARF
Protein Properties Length: 658aa    MW: 73331.9 Da    PI: 8.0674
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma41g00710.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3764.1e-24112213199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f k+lt+sd+++ g +++p+ +ae++         ++   +t+  +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   + 
  Zosma41g00710.1 112 FAKTLTQSDANNGGGFSVPRYCAETIfprldhsVDPP--VQTVLARDVHGEQWKFRHIYRGTPRRHLLTTGWSTFVNQKKLMAGDSIVFL--RA 201
                      89***************************99743333..349************************************************..44 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      +++el+v+++r+
  Zosma41g00710.1 202 ENGELRVGIRRA 213
                      9999******97 PP

2Auxin_resp113.42.1e-37280363183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                      aa+ a+++++Fev Y+Prast+eF+vk++ v+k++++++++GmRfkm fetedss++++ +Gt++gv+ +dp+rWp+S+Wr+L+
  Zosma41g00710.1 280 AANLATNGQPFEVAYYPRASTPEFCVKASTVRKSTRIQWTAGMRFKMPFETEDSSRISWfMGTISGVQFSDPIRWPQSPWRVLQ 363
                      7899******************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.3E-36105216IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.01E-29105214IPR015300DNA-binding pseudobarrel domain
CDDcd100175.49E-21111212No hitNo description
PfamPF023624.8E-22112213IPR003340B3 DNA binding domain
SMARTSM010193.8E-22112214IPR003340B3 DNA binding domain
PROSITE profilePS5086313.366112214IPR003340B3 DNA binding domain
PfamPF065071.6E-32280363IPR010525Auxin response factor
PROSITE profilePS5174515.551569648IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MKDSANYLDS HLWHACAGGM VQMPPVNTKV FYFPQGHAEH AHGNVDFGIA PKFPSQILCR  60
VLAINFLADP GTDEVFAKIH LAPVKLNDFG DLNLVNDGVD IREEVQEKLA SFAKTLTQSD  120
ANNGGGFSVP RYCAETIFPR LDHSVDPPVQ TVLARDVHGE QWKFRHIYRG TPRRHLLTTG  180
WSTFVNQKKL MAGDSIVFLR AENGELRVGI RRAKRGIAGE CCEPPSGWNT STMANCRPTP  240
YGNLSGFLTE EDNFSKVLGS NVNNTGRGKE RITAATVIEA ANLATNGQPF EVAYYPRAST  300
PEFCVKASTV RKSTRIQWTA GMRFKMPFET EDSSRISWFM GTISGVQFSD PIRWPQSPWR  360
VLQVTWDEPD LLQNVKRVSP WLVELVSTLP PIHISPFSPP RKKLRHHPNF DAHHPTPTFV  420
GKLVGPPPVN NNTSLYCLSN RTPAGIQGAR HGHFGSSFSD LHFNKLQSSP MGIIPSTGFH  480
HYIERSGPMN RNHDYFSNSF TNTATECGSN TKIQPASFLL FGKTIRTTEI SSETPSPVGM  540
GNSWTDDSFP NQSWMKERHQ AVEMNSPEMG HCKVFMESED VGRTLDLSVL DSYEELCLKL  600
TDMFGLPESN RKTHVCYRNS TGAVKYAGDE PFGEFKMSAR RLMIVMDSGG ESARARW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A8e-80838451388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010253698.10.0PREDICTED: auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A0K9P4T10.0A0A0K9P4T1_ZOSMR; Auxin response factor
STRINGXP_010253698.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]