PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma37g00460.1
Common NameZOSMA_37G00460
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 423aa    MW: 45775.8 Da    PI: 6.2466
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma37g00460.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH521.3e-16211257455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  ErrRRdriN+++  L++l+P++      K++Ka++L +A+eY+k Lq
  Zosma37g00460.1 211 VHNLSERRRRDRINEKMKALQKLIPNC-----NKVDKASMLDEAIEYLKTLQ 257
                      6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.07E-20204265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-20204264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.362207256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.48E-18210261No hitNo description
PfamPF000103.3E-14211257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-18213262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MADLPSSSLS DTTNLVEIIW ENGQIMVQPQ IQSGGKPLQN TEDKDFAINQ LSNTDVSWLT  60
NYTTTDDYGI EFLSPEFTGD KSAATTSDKL QTTQDPDAVT SGFFNFSNFT RPVALHQTNL  120
QNAEKLKTLN PTDNAPVIKW DEKGIISSGK ERKVPEAAPS VPKHKIKKKL LEGNGSSNKS  180
KDPDDESADC AKKHNSCSTS STNKRSRAAE VHNLSERRRR DRINEKMKAL QKLIPNCNKV  240
DKASMLDEAI EYLKTLQFQL QMMSTMGNGG AGMHMPPATM MMQQHMAPFP QIGVGMPGMP  300
GMPGMSGMPG MPGMGMLDVN GRSLMMRVPA QYPCPSIPLT TASQYQPNGV PVIGHPVQSV  360
ANGSPYFPLP THSIATPVAT TAMDFGPEVG VKTPEMACKN SETGHKVVVE EGDNDDNLCG  420
SN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1215220ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9P5610.0A0A0K9P561_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35273775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-37phytochrome interacting factor 3