PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma32g00560.1
Common NameZOSMA_32G00560
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family LBD
Protein Properties Length: 231aa    MW: 25177.1 Da    PI: 6.8358
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma32g00560.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.98.4e-397104197
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      +C aCk+lrrkC+++Cv+apyf++eq + +fa++hk+FGasnv+kll++lp  +r +a+ ++ yeA+ar++dP+yG+v++i++lqqq+++l+a+
  Zosma32g00560.1   7 PCGACKFLRRKCVRGCVFAPYFCHEQgATHFAAIHKVFGASNVSKLLSDLPLPDRCEAAVTISYEAQARIQDPIYGCVSHIFALQQQVANLQAQ 100
                      7*************************89****************************************************************** PP

           DUF260  94 lall 97 
                      la l
  Zosma32g00560.1 101 LANL 104
                      9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.7526108IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-377103IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MTGFGSPCGA CKFLRRKCVR GCVFAPYFCH EQGATHFAAI HKVFGASNVS KLLSDLPLPD  60
RCEAAVTISY EAQARIQDPI YGCVSHIFAL QQQVANLQAQ LANLIQEQAV AVAATAAVHQ  120
NIACSSSLIP EENKNLHNKF QMYQQQDLHG VVYNNNNNSS MDSDNLVYDY CSGLSMNNNN  180
NNNNNNGSSS SSSSCANMGS FDILPNKRNK SASYQDLEDL QSVAYAYLQR *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010274825.14e-80PREDICTED: LOB domain-containing protein 29
TrEMBLA0A0K9PAK31e-170A0A0K9PAK3_Z
STRINGGLYMA13G18210.12e-70(Glycine max)
STRINGBGIOSGA011445-PA3e-70(Oryza sativa Indica Group)
STRINGORGLA03G0035900.13e-70(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25013893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.11e-52lateral organ boundaries-domain 29