PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma27g00610.1
Common NameZOSMA_27G00610
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family TCP
Protein Properties Length: 225aa    MW: 24269.6 Da    PI: 5.1166
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma27g00610.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP118.96.1e-3752136386
              TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasnss 86 
                      +k+++++++h kv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqq++ +i+++tg+++ +as++   +++  s++++  +
  Zosma27g00610.1  52 PKRRSTKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSESSIIAATGSGTVPASSFsvtSSGPISNQVQ--N 136
                      799************************************************************888886554332222222222..1 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.9E-3056133IPR005333Transcription factor, TCP
PROSITE profilePS5136927.27257111IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MDDLEVPNFH HHGMETESET QDETPGEEQE IGEGGGRELV LNKERQQQQL VPKRRSTKDR  60
HKKVDGRGRR IRMPALCAAR IFQLTRELGH KSDGETIQWL LQQSESSIIA ATGSGTVPAS  120
SFSVTSSGPI SNQVQNVSVS SAVESRNGWS SEMWNAFENQ GSGFGHMSIA SMMSGGLPGL  180
ELGLSQDIGI SNPLGFDHYN QQQIGRGSDS GGGDEVGGVN HHEM*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006844624.19e-51transcription factor TCP20
RefseqXP_011623455.19e-51transcription factor TCP20
RefseqXP_020693581.18e-51transcription factor TCP20
SwissprotQ9LSD54e-43TCP20_ARATH; Transcription factor TCP20
TrEMBLA0A0K9PDF81e-162A0A0K9PDF8_ZOSMR; TCP transcription factor 18
STRINGERN062993e-50(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28643269
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27010.14e-40TCP family protein
Publications ? help Back to Top
  1. Zhu P, et al.
    Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972
    [PMID:27708161]
  2. Wu JF, et al.
    LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
    Nat Commun, 2016. 7: p. 13181
    [PMID:27734958]
  3. Guan P, et al.
    Interacting TCP and NLP transcription factors control plant responses to nitrate availability.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424
    [PMID:28202720]
  4. Guan P
    Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 1697
    [PMID:29033968]
  5. Zhang N, et al.
    MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis.
    Plant J., 2018. 93(1): p. 66-78
    [PMID:29086441]
  6. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]
  7. Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K
    Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis.
    Microbes Environ., 2017. 32(4): p. 314-323
    [PMID:29187692]