PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma255g00110.1
Common NameZOSMA_255G00110
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family NAC
Protein Properties Length: 393aa    MW: 43489.9 Da    PI: 6.56
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma255g00110.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.95.7e-51181571128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.......lelee...vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                       lppGfrFhPtdeel+++yL+ kv +             +    i e+d++++ePw+Lp  +k +e+ewyfFs +d+ky+tg r+nrat +gyW
  Zosma255g00110.1  18 LPPGFRFHPTDEELITYYLASKVYNIAagagtssG---SallQIVEIDLNRCEPWELPDVAKMGEREWYFFSLKDRKYPTGLRTNRATGAGYW 107
                       79********************9887755555432...14436***************8888899**************************** PP

               NAM  84 katgkdkevlsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       katgkd+ev+s+     +++lvg+kktLvfykgrap+gekt+Wv+heyrl
  Zosma255g00110.1 108 KATGKDREVYSSsthsgSSSLVGMKKTLVFYKGRAPRGEKTKWVLHEYRL 157
                       ***********9777666666***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-6110180IPR003441NAC domain
PROSITE profilePS5100557.40618180IPR003441NAC domain
PfamPF023651.5E-2619157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MGDMLWDLIG EDTNRHGLPP GFRFHPTDEE LITYYLASKV YNIAAGAGTS SGSALLQIVE  60
IDLNRCEPWE LPDVAKMGER EWYFFSLKDR KYPTGLRTNR ATGAGYWKAT GKDREVYSSS  120
THSGSSSLVG MKKTLVFYKG RAPRGEKTKW VLHEYRLDGH LANHLFHNKE EWVICRIFHK  180
AVSDQKKIDP FLLNHAYILE PPSSSSSSSS CCFSSSTPFL MHETPNIQAF LQKNTFININ  240
SNNIGSNDNS VMTIGNNNHV ALPINVGPPP LSADPSSISP ANITSLLKSN PNHCLGLVRE  300
TIPVPEQCNV QTLEEDDQFD RSSVLNWTDY PNPHNPWSFD VGIFNSSLYC AGNATTTTTT  360
TTTTVHDMHS LFSRLPPLPT GATLGDSLPL IP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A7e-491818620174NAC domain-containing protein 19
3swm_B7e-491818620174NAC domain-containing protein 19
3swm_C7e-491818620174NAC domain-containing protein 19
3swm_D7e-491818620174NAC domain-containing protein 19
3swp_A7e-491818620174NAC domain-containing protein 19
3swp_B7e-491818620174NAC domain-containing protein 19
3swp_C7e-491818620174NAC domain-containing protein 19
3swp_D7e-491818620174NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PFM30.0A0A0K9PFM3_ZOSMR; Uncharacterized protein
STRINGGorai.009G186000.11e-96(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112373341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.12e-78NAC family protein