PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma170g00320.1
Common NameZOSMA_170G00320
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family LBD
Protein Properties Length: 227aa    MW: 24374.5 Da    PI: 8.1606
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma170g00320.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260131.24.2e-41151151100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                       +C aCk+lrrkC+++C++apyf +eq + +fa+vhk+FGasnv+k+l ++p+++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+++l+a
  Zosma170g00320.1  15 PCGACKFLRRKCVSGCIFAPYFDSEQgAVHFAAVHKVFGASNVSKVLLHIPPHKRLDAVVTICYEAQARLRDPVYGCVAHIFTLQQQVANLQA 107
                       7***********************9989***************************************************************** PP

            DUF260  93 elallkee 100
                       el++l+++
  Zosma170g00320.1 108 ELSYLQTH 115
                       ***99976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.32914116IPR004883Lateral organ boundaries, LOB
PfamPF031955.2E-4015113IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MSAKASGGGG GSAGPCGACK FLRRKCVSGC IFAPYFDSEQ GAVHFAAVHK VFGASNVSKV  60
LLHIPPHKRL DAVVTICYEA QARLRDPVYG CVAHIFTLQQ QVANLQAELS YLQTHLATLQ  120
LSFPSQQQPQ PDHLLSQQQP LSISDLPSSP ATLSTFFDLS TLFVDSQPGR QQQQVTGQFD  180
MKHMERSGSS SSGGNGGGDL QALARELVDR HWAASRNIEA GWKHSQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009400358.12e-83PREDICTED: LOB domain-containing protein 18-like
SwissprotO813238e-69LBD30_ARATH; LOB domain-containing protein 30
TrEMBLA0A0K9PSQ91e-167A0A0K9PSQ9_Z
STRINGGSMUA_Achr5P11330_0017e-83(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33463782
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.13e-61LOB domain-containing protein 18