PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma170g00210.1
Common NameZOSMA_170G00210
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family LBD
Protein Properties Length: 219aa    MW: 24046.3 Da    PI: 10.2141
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma170g00210.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26091.69.4e-29541421101
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaCk+lrr+C ++C+++pyf  ++p+kfa vhk+FGasn            r da++slvyeA++r+rdPvyG++g i++lqqq++ l+ae
  Zosma170g00210.1  54 PCAACKLLRRRCGQECPFSPYFSPHEPQKFASVHKVFGASN------------RFDAANSLVYEANVRIRDPVYGCMGAISTLQQQVQVLEAE 134
                       7*************************************997............7799************************************ PP

            DUF260  94 lallkeel 101
                       l+++++++
  Zosma170g00210.1 135 LNMVRTQI 142
                       ***99875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.8553142IPR004883Lateral organ boundaries, LOB
PfamPF031952.8E-2854139IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MLGCKSTAIS VYRERPDETS KRIKRDSSST TVVDRIGRRH GLGPSTGRLN NITPCAACKL  60
LRRRCGQECP FSPYFSPHEP QKFASVHKVF GASNRFDAAN SLVYEANVRI RDPVYGCMGA  120
ISTLQQQVQV LEAELNMVRT QILKLKYRRS SVNVLPTSHA AMVGRRGSST PFPPPSGPLP  180
PVTFSQFSDL SNSSSIYTLH SNSTDFSSIT TENLPFFG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010921102.11e-77PREDICTED: LOB domain-containing protein 15
SwissprotQ9AT611e-57LBD13_ARATH; LOB domain-containing protein 13
TrEMBLA0A0K9PUU31e-161A0A0K9PUU3_Z
STRINGVIT_13s0067g02380.t017e-76(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26303891
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.12e-55LOB domain-containing protein 15