PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma16g00330.1
Common NameZOSMA_16G00330
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 331aa    MW: 36642.4 Da    PI: 4.7349
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma16g00330.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.51.6e-10154197654
                      HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                       ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y k+L
  Zosma16g00330.1 154 LMAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYTKEL 197
                      589*********************66......**************8876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.072148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.02E-14151211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-8154197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-11154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.30E-4155209No hitNo description
Gene3DG3DSA:4.10.280.106.4E-15155211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00144256284No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MELDENGFLE ELLGIRRDSW ENFPSSMADL FPSDCFEDAT NNAEPSSIRL PPPLQPTANV  60
IPNLGSAASQ EMVYSSCLFG NGFDGGVAGV EDVCLDGVIC KVEAGVHQTH QHQHQPVPQG  120
AGFEILSSSS TSSCCAERKM RMMRKVEGQP SKNLMAERRR RKRLNDRLSM LRSVVPKISK  180
MDRTSILGDT IDYTKELLEK IKVLQEEIEA TSSITTTTTS DDPRPQRENT FKELNPNGML  240
ARNTPQFDVE RREVDTRVEI CCAGKPGLLL STVSTLEALG LEIQQCVVSC FNEFGMQASC  300
SEEMEQRTVI STDEIKQNLF RNAGYGGRCM *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156163ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010935191.11e-108transcription factor bHLH93
SwissprotQ9LSL11e-75BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A0K9PSX90.0A0A0K9PSX9_ZOSMR; Transcription factor bHLH61
STRINGXP_008806159.11e-105(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.18e-76beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]