PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma16g00020.1
Common NameZOSMA_16G00020
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family GeBP
Protein Properties Length: 281aa    MW: 31251.2 Da    PI: 5.054
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma16g00020.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573105.63.9e-3370174297
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk....aksgke..psfskehdq 86 
                      lfqrlw+++Dei++L G+++f++++g+  ++++ d+  fye +++++++++sksqlveK+rrLKkKf+++++k      +gke  ++f+++hd+
  Zosma16g00020.1  70 LFQRLWTDDDEILILEGFLEFTSQRGTtgHAHQhDTGPFYERIRSQVELDFSKSQLVEKLRRLKKKFRTNMAKmssgNGTGKEafFAFKSAHDR 163
                      79************************98755556***************************************6655233444226799***** PP

           DUF573  87 kifelskkiWg 97 
                      k++e+s+kiWg
  Zosma16g00020.1 164 KAYEISEKIWG 174
                      **********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.4E-3071174IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MPFPEPDLPT SPVTDPTIID SHAIFGEDEE DTDADGESDE VQGDHHMRAT PISIVSPAPI  60
SPPVPDPRRL FQRLWTDDDE ILILEGFLEF TSQRGTTGHA HQHDTGPFYE RIRSQVELDF  120
SKSQLVEKLR RLKKKFRTNM AKMSSGNGTG KEAFFAFKSA HDRKAYEISE KIWGGGLDSR  180
KCDDGIGDGG KIRKRGRKSG EVGLEVKVEE TATTSSAVLA VAAASEILKM DLPMVEDCVG  240
AGLSERWRQQ QILELEVYSK RLELIQEEIK DTLVKLRSGR *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009402491.17e-50PREDICTED: probable transcription factor At5g28040
RefseqXP_020271749.15e-49probable transcription factor At3g04930
TrEMBLA0A0K9PSJ00.0A0A0K9PSJ0_ZOSMR; DNA-binding storekeeper protein-related transcriptional regulator
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.28e-36DNA-binding storekeeper protein-related transcriptional regulator