PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma166g00650.1
Common NameZOSMA_166G00650
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family AP2
Protein Properties Length: 739aa    MW: 80627.6 Da    PI: 6.5796
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma166g00650.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.93.9e-11313369155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  Zosma166g00650.1 313 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 369
                       57*******************4444.2455535555.779999**************98 PP

2AP246.68.6e-15412463155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Zosma166g00650.1 412 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 463
                       57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.63E-20313379No hitNo description
SuperFamilySSF541711.05E-14313379IPR016177DNA-binding domain
PfamPF008471.0E-8313369IPR001471AP2/ERF domain
PROSITE profilePS5103217.319314377IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-12314378IPR001471AP2/ERF domain
SMARTSM003803.3E-22314383IPR001471AP2/ERF domain
PRINTSPR003674.1E-6315326IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-17412473IPR016177DNA-binding domain
PfamPF008471.1E-9412463IPR001471AP2/ERF domain
CDDcd000186.83E-25412473No hitNo description
PROSITE profilePS5103219.045413471IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-18413472IPR001471AP2/ERF domain
SMARTSM003801.5E-33413477IPR001471AP2/ERF domain
PRINTSPR003674.1E-6453473IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000723Biological Processtelomere maintenance
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0010073Biological Processmeristem maintenance
GO:0010449Biological Processroot meristem growth
GO:0019827Biological Processstem cell population maintenance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 739 aa     Download sequence    Send to blast
MASMNNWLGF SLSPQQEHPS TQQPSNTLPT TSVSRLIDDV SVVADCYGLA ADGSSPSLNI  60
PSNSFGILDA YNHHTHHHHS QDWTKGLDFK GGSSELSMLV GSSSINNNNN NSNSNNMDTE  120
EPKLEDFLGG NSFSDHEHHQ KMNSIAGHGF VDNSDDYMFS NCSLQLPPAP VPSNGGGTMD  180
AVNNHQNGSN SSIGLSMIKT WLRNQPAPTQ QEQQQQQYVG KNGDLVSAVG APVQNNVQSL  240
SLSMSTGSQL SSPLPLLASD GRGESSSSVD NKQKGGGGSS TSAPLDVQSG GGAPSAVEAV  300
PRKSIDTFGQ RTSIYRGVTR HRWTGRYEAH LWDNSCRREG QTRKGRQGGY DKEEKAARAY  360
DLAALKYWGS TTTTNFPISN YETELEEMKH KTRQEYVASL RRKSSGFSRG ASIYRGVTRH  420
HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGLNAVTNF DMSRYDVNSI  480
LESSTLPIGG TAKRMKEVSE HAEASVDARR TDHEDITVSY LTDGICSNYR SHQHFGWPAA  540
VAYQQNQQLG LHYPYVQQQP QQQQRGWCKQ EQDPVTAAVH GYQDLHLGNN THNFFHPPGL  600
HNLMGMDSTS SMDHSSDSNF VLYNGGGSSN HGYMMPMSLV GDHGQQGSTN NNYGDQHDHN  660
NNNTNSMLVS STDLYSNGRN NNSNNVYYLS QQSPGDSLKT NGYDHHNWAP TTTPVPGITP  720
NGANTIAGAP VFSVWNDA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008804192.20.0AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A0K9PVT80.0A0A0K9PVT8_ZOSMR; AP2-like ethylene-responsive transcription factor
STRINGXP_008804192.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20840.11e-120AP2 family protein