PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma133g00360.1
Common NameZOSMA_133G00360
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ARF
Protein Properties Length: 779aa    MW: 87961 Da    PI: 6.0219
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma133g00360.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.45.8e-23128228198
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +
  Zosma133g00360.1 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELIARDLHEVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--W 216
                       99*****************************86555544..8************************************************..8 PP

                       SSEE..EEEEE- CS
                B3  87 rsefelvvkvfr 98 
                       +++ +l+++++r
  Zosma133g00360.1 217 NEKNQLLLGIRR 228
                       889999999997 PP

2Auxin_resp115.16e-38254337183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       aahaa+t+s F+++YnPras+seFv++++++ ka+  +++svGmRf+m fete+ss rr++Gt++g+ dldpvrW+nS+Wrs+k
  Zosma133g00360.1 254 AAHAAATNSRFTIFYNPRASPSEFVIPLSRYAKAVFhTRISVGMRFRMLFETEESSVRRYMGTITGIGDLDPVRWSNSHWRSVK 337
                       79********************************87599******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.58E-48114257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-40121243IPR015300DNA-binding pseudobarrel domain
CDDcd100173.81E-21127228No hitNo description
PfamPF023623.0E-21128228IPR003340B3 DNA binding domain
PROSITE profilePS5086312.012128230IPR003340B3 DNA binding domain
SMARTSM010197.9E-24128230IPR003340B3 DNA binding domain
PfamPF065074.7E-33254337IPR010525Auxin response factor
SuperFamilySSF542771.83E-6675755No hitNo description
PROSITE profilePS5174521.881681765IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 779 aa     Download sequence    Send to blast
MKVSTVGLGQ LSQEVNEKRC LNSELWHACA GPLVSLPNIG TRVVYFPQGH SEQVAVSTSK  60
EVEGQIPSYP NLPPQLICQL HDVTMHADVE TDEVYAQLTL QPLSVEEQKD NYLPLDMGIP  120
SKQPMNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFT QQPPAQELIA RDLHEVEWKF  180
RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRIN RSQTVMPSSV  240
ISSDSMHIGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LSRYAKAVFH TRISVGMRFR  300
MLFETEESSV RRYMGTITGI GDLDPVRWSN SHWRSVKVGW DESTAGNRQP RVSLWEIEPL  360
TTFPMYPSMF PLRLKRPWHP GASSLQEDGN AFMWLRGDSG DRGLQTLGMS PWVQQRLEPL  420
LVNNENDQYQ SMASAALHDI RNSDDLKQQF LQLQHPFQYS QQPFRNNPLT LQQIIPQMQP  480
QQIQNTQMHC ISESQSQGSS HQDQLQQTYR ESFQIPNNQI QQNQIALSSP LSQKTIFPDT  540
GTNFPQSLPT MQNVMGNLCP EGNANLLTFS RTEPIVSEGQ HQSWDPKFSA SNATTFSNTV  600
PPFLGKDTSL ETEHCNVDSQ NHTLFGVHID PSPFLPTAVP NIDNDITIPY GNPCFQNSLY  660
GCVDETTSLL HSTGETDQQN RTFVKVYKSG SVGRSLDITR FSNYNELRES LGHMFSIEGL  720
LEDPLRSGWQ LVFVDRENDV LLLGDDPWDS FVNNVWYIKI LSPDDVQKME KQCLESFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1591335843388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00033PBMTransfer from AT5G37020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019711032.20.0auxin response factor 12-like isoform X1
RefseqXP_029116083.10.0auxin response factor 12-like isoform X1
RefseqXP_029116084.10.0auxin response factor 12-like isoform X1
RefseqXP_029116085.10.0auxin response factor 12-like isoform X1
RefseqXP_029116086.10.0auxin response factor 12-like isoform X1
SwissprotQ258Y50.0ARFL_ORYSI; Auxin response factor 12
TrEMBLA0A0K9PYV70.0A0A0K9PYV7_ZOSMR; Auxin response factor
STRINGXP_008804149.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58503039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0auxin response factor 8