PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma12g00320.1
Common NameZOSMA_12G00320
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family NAC
Protein Properties Length: 224aa    MW: 24899.9 Da    PI: 7.9534
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma12g00320.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM138.25e-43181461127
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lppGfrF+Ptdeelv++yL++kv + +l++ ++i+++++ +++PwdLp   +++++ ++ y F  +  ky++g+r+nra+ sg+Wk+ gkdk +
  Zosma12g00320.1  18 LPPGFRFQPTDEELVTHYLRRKVLSCPLPA-SIIPDIQLSRFDPWDLPgGgAAASSGNDRYLFNLKMVKYRNGNRTNRAAGSGFWKTAGKDKLI 110
                      79****************************.89***************534566678899********************************** PP

              NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                      +s+ +++++g+kk +vfy+g+  +g++tdWvmhey 
  Zosma12g00320.1 111 MSSrGDQVIGIKKFFVFYRGKPLHGQRTDWVMHEYY 146
                      *9967788***************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.58E-5414170IPR003441NAC domain
PROSITE profilePS5100550.88818170IPR003441NAC domain
PfamPF023652.8E-2319145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010089Biological Processxylem development
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MGGDGGGSGG GGMTVIRLPP GFRFQPTDEE LVTHYLRRKV LSCPLPASII PDIQLSRFDP  60
WDLPGGGAAA SSGNDRYLFN LKMVKYRNGN RTNRAAGSGF WKTAGKDKLI MSSRGDQVIG  120
IKKFFVFYRG KPLHGQRTDW VMHEYYYLAP TDSSVANYTE DWVLCHTFQK KKPVARRNTE  180
YEPYDNPPPP SPPMSCVTDI SDGEYNSEDE ESCYHSNAAQ EKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-411317112166NO APICAL MERISTEM PROTEIN
1ut4_B2e-411317112166NO APICAL MERISTEM PROTEIN
1ut7_A2e-411317112166NO APICAL MERISTEM PROTEIN
1ut7_B2e-411317112166NO APICAL MERISTEM PROTEIN
3swm_A2e-411317115169NAC domain-containing protein 19
3swm_B2e-411317115169NAC domain-containing protein 19
3swm_C2e-411317115169NAC domain-containing protein 19
3swm_D2e-411317115169NAC domain-containing protein 19
3swp_A2e-411317115169NAC domain-containing protein 19
3swp_B2e-411317115169NAC domain-containing protein 19
3swp_C2e-411317115169NAC domain-containing protein 19
3swp_D2e-411317115169NAC domain-containing protein 19
4dul_A2e-411317112166NAC domain-containing protein 19
4dul_B2e-411317112166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00507DAPTransfer from AT5G13180Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028076724.15e-66NAC domain-containing protein 83-like
SwissprotQ9FY937e-60NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A0K9PZ571e-167A0A0K9PZ57_ZOSMR; NAC domain protein
STRINGXP_010530936.18e-64(Tarenaya hassleriana)
STRINGGSMUA_Achr6P23840_0016e-64(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63173254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.15e-63NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]