PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma11g00600.1
Common NameZOSMA_11G00600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family NAC
Protein Properties Length: 362aa    MW: 39723.5 Da    PI: 7.2416
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma11g00600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM110.42e-34582031128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra..... 77 
                      lp+G++F+Ptd+el+ e+L+++v +++       +   +    +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+     
  Zosma11g00600.1  58 LPAGVKFDPTDQELI-EHLEAQVIRSEdqkshplI---DefipTIHGEdGICYTHPEKLP-GVTRDGLSKHFFHRPSKAYTTGTRKRRKiqtae 146
                      799************.8899887776645555443...144434776647**********.555666799******************856666 PP

              NAM  78 .....tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                            ++ +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Zosma11g00600.1 147 cgdlqGSETRWHKTGKTRPVVV-NGRQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 203
                      6665544788************.999***********5547999999*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-3753222IPR003441NAC domain
PROSITE profilePS5100532.32658222IPR003441NAC domain
PfamPF023653.0E-1559203IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MDLCAVGRSM NRNINQNMSS SSYLLIDSKI EEQQMFGYGG VCPNCGYKVE SKPDWVGLPA  60
GVKFDPTDQE LIEHLEAQVI RSEDQKSHPL IDEFIPTIHG EDGICYTHPE KLPGVTRDGL  120
SKHFFHRPSK AYTTGTRKRR KIQTAECGDL QGSETRWHKT GKTRPVVVNG RQKGCKKILV  180
LYTNFGKHRK PEKTNWVMHQ YHLGELEEEK DGELVVSKIF YQTQPRHCNW SAERAATAAA  240
AATAAATSSG GEMHRATVDS GSGSTEIVIG GRDRDDHQVC SIAGFSGYGG AGLLDLTGVI  300
DPTTTTSTAS AFHQISTGGV ISPMITNSNL DIVDPYQRLL LQHNESLHQV KPNSTQLNST  360
Q*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025700838.11e-133NAC domain-containing protein 75
RefseqXP_025700839.11e-133NAC domain-containing protein 75
RefseqXP_025700840.11e-133NAC domain-containing protein 75
SwissprotQ9M0F81e-121NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A0K9Q1680.0A0A0K9Q168_ZOSMR; Uncharacterized protein
STRINGXP_008354424.11e-129(Malus domestica)
STRINGXP_006451346.11e-128(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145338117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-115NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]