PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma117g00720.1
Common NameZOSMA_117G00720
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family NAC
Protein Properties Length: 315aa    MW: 35538.8 Da    PI: 6.9853
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma117g00720.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.36.1e-53111441128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                       l+pGfrFhP+deel+++yL+kk++g++    ++  +++++vd++k+ePwdLp ++  + kewyfF+ rd+kyatg+r+nrat sgyWkatgkd
  Zosma117g00720.1  11 LAPGFRFHPRDEELINDYLAKKIAGTTtgddFNSLDMMEDVDLNKIEPWDLPDNTCVGGKEWYFFCLRDRKYATGQRTNRATLSGYWKATGKD 103
                       579**********************998888677789***************7666789********************************** PP

               NAM  90 kevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++v++   +g+lvg++ktLvfy+grapkg+ktdWvmhe+r+
  Zosma117g00720.1 104 RHVTDGgkGGRLVGMRKTLVFYRGRAPKGKKTDWVMHEFRM 144
                       ****97778888***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-583172IPR003441NAC domain
PROSITE profilePS5100556.93811172IPR003441NAC domain
PfamPF023651.2E-2613144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MSFLSMMESK LAPGFRFHPR DEELINDYLA KKIAGTTTGD DFNSLDMMED VDLNKIEPWD  60
LPDNTCVGGK EWYFFCLRDR KYATGQRTNR ATLSGYWKAT GKDRHVTDGG KGGRLVGMRK  120
TLVFYRGRAP KGKKTDWVMH EFRMELEDTL YSSCLNHSSN NNDWVLCRVF CKTRSRGTGI  180
SGDCKDDVSS SSSLPSLINT YINFDQPNTH MQYGFNQERV PCFSNILNGT GLLTPPAPMP  240
STSNTASGRR FPADATATSL WSVPPLTNFV FDEKSLDKDL NFNYDQTERI GRSSESCNFA  300
ENPFVGQQSM WNPF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-49617512168NO APICAL MERISTEM PROTEIN
1ut4_B5e-49617512168NO APICAL MERISTEM PROTEIN
1ut7_A5e-49617512168NO APICAL MERISTEM PROTEIN
1ut7_B5e-49617512168NO APICAL MERISTEM PROTEIN
4dul_A5e-49617512168NAC domain-containing protein 19
4dul_B5e-49617512168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009419008.23e-90PREDICTED: NAC domain-containing protein 21/22 isoform X1
RefseqXP_018686778.13e-90PREDICTED: NAC domain-containing protein 21/22 isoform X2
SwissprotQ84TE69e-74NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A0K9Q2520.0A0A0K9Q252_ZOSMR; NAC domain-containing protein 21/22
STRINGGSMUA_Achr9P26140_0011e-89(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.24e-71NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]