PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G899865_P01
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 316aa    MW: 34557.7 Da    PI: 4.9543
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G899865_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.31.4e-08284310430
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC CS
                HLH   4 ahnerErrRRdriNsafeeLrellPka 30 
                         hn  ErrRRdri++++  L+el+P++
  GRMZM5G899865_P01 284 VHNLSERRRRDRIKEKMLVLQELIPHC 310
                        6************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF025191.4E-2476157IPR003676Small auxin-up RNA
CDDcd000831.19E-6276314No hitNo description
SuperFamilySSF474594.84E-8278311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.715280316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-8284312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.7E-6284310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MPPTPNPKNL AASLPILTLG GGASGGGRPP SKFESATVDL PTSVILLAAV DRGSDEMAPP  60
DPEDGSREEK RTKASKLQEQ GEGEEEATGL PSDVPRGHFA VYVGERRRRF VVPITLLDRP  120
EFRYLLRRAK EEFGFTSAGG ALVLPCEEVA FCSLTSALAC ARPRPAPPSD RDPLGTSDIT  180
AEETAAWFPD TLDDPLEKDL YTQLWYSTIA DAAPQHEGTF PGPTSHPSPP LPPVGSSNVE  240
SSWAGDICST FCDNNQDVEC KEANEETKPW QRNGPKRRTR AAEVHNLSER RRRDRIKEKM  300
LVLQELIPHC NKVQVP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104109ERRRRF
2275292KRRTRAAEVHNLSERRRR
3288293ERRRRD
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G899865
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G899865_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9700072e-84EU970007.1 Zea mays clone 338472 mRNA sequence.
GenBankBT0612902e-84BT061290.1 Zea mays full-length cDNA clone ZM_BFb0131L15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008666826.11e-111PREDICTED: uncharacterized protein LOC103645571
TrEMBLA0A096UIW60.0A0A096UIW6_MAIZE; Uncharacterized protein
STRINGGRMZM5G899865_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25816128
MonocotsOGMP31743482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.24e-15phytochrome interacting factor 3