PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G895672_P01
Common NameGRAS43, LOC103655011, ZEAMMB73_683057
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 645aa    MW: 72101.2 Da    PI: 6.8419
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G895672_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS292.89.2e-902646352374
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                          lL++cAea++++d++ a +lL r+++++sp+gd+++Rla++ft++L+arl++++s++yk l ++  +    +++l++++++  +s ++ +
  GRMZM5G895672_P01 264 HALLIQCAEAMATNDQQGAANLLLRIRHHSSPTGDATRRLAHCFTQGLEARLMGTGSHMYKLLLAKCRA---ATSTLKVYQMYMAASSVFPV 352
                        579**********************************************************99888887...78999*************** PP

               GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlva 183
                        s+l+ N+  ++a++g +++Hi+ +++++G++ p Ll+ L+sR++gpp++RiTg+++p +g    + +eetg+rL++ A++++vpf+f++ +a
  GRMZM5G895672_P01 353 SFLLSNRIAYNAIAGRQKLHIVHYGLGHGFHLPDLLRMLSSREGGPPEVRITGIDNPLPGfhPGHIIEETGRRLSDCARQFRVPFKFRA-IA 443
                        *********************************************************999999999***********************.79 PP

               GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                         +le++  e+L+++p+E+l+V +++  ++l+desv+++   +rd+vLk + +++P+v+++   + +++++ F+ rf eal+y++a+fd++++
  GRMZM5G895672_P01 444 AKLEAVCAEDLDIDPDEVLVVISHFCFKNLMDESVTVDRpnPRDTVLKNIANMRPEVFIHDILNGSYSGAFFVSRFREALKYFAAMFDAMDT 535
                        9********************************999887779************************************************** PP

               GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdr 365
                         +p+e+++r   E+  l+  ++n+vaceg +r+ r  ++++W+ r ++aG++++pl+ ++++  k  +++ + +   ++e++++l+ gWk+r
  GRMZM5G895672_P01 536 IMPQENQNRLLAEKW-LAMCVMNIVACEGVDRVSRPHSYKQWQVRSKRAGLRQLPLDPNIVQMSKDKVKEEYHKYIVINEDHEWLLTGWKGR 626
                        ********9999987.********************************************************8989999************* PP

               GRAS 366 pLvsvSaWr 374
                         L ++S W+
  GRMZM5G895672_P01 627 VLSAFSTWT 635
                        ********5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098549.441237615IPR005202Transcription factor GRAS
PfamPF035143.2E-87264635IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MRIPPELLSS ETQPQTAAPP SPSPSPYLDL PPAPHADNAK DDLSYISHML MEEDIVVDNL  60
YHRYRNHPML LSAEQPFAQI LCANATSDAI ATDISVQPYP LQSSVPTPEY YSYSDMVTSN  120
SMHVHQDASS LLVNGSTHEA ESSGMDMISM AFYKGMEDAT KLLITSKTHS DTLDRDRGRK  180
KRLQEAKDGV GVAMGRSSKQ KAVQWQPGSE EEAAACEMLD QLMLSDEPSH AGKQRELISS  240
MKLEKPQERR RGGAAGLSHT VDLHALLIQC AEAMATNDQQ GAANLLLRIR HHSSPTGDAT  300
RRLAHCFTQG LEARLMGTGS HMYKLLLAKC RAATSTLKVY QMYMAASSVF PVSFLLSNRI  360
AYNAIAGRQK LHIVHYGLGH GFHLPDLLRM LSSREGGPPE VRITGIDNPL PGFHPGHIIE  420
ETGRRLSDCA RQFRVPFKFR AIAAKLEAVC AEDLDIDPDE VLVVISHFCF KNLMDESVTV  480
DRPNPRDTVL KNIANMRPEV FIHDILNGSY SGAFFVSRFR EALKYFAAMF DAMDTIMPQE  540
NQNRLLAEKW LAMCVMNIVA CEGVDRVSRP HSYKQWQVRS KRAGLRQLPL DPNIVQMSKD  600
KVKEEYHKYI VINEDHEWLL TGWKGRVLSA FSTWTADDVR SGLSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-332676348374GRAS family transcription factor containing p
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G895672
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G895672_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280360.0KJ728036.1 Zea mays clone pUT6180 GRAS transcription factor (GRAS43) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008680054.10.0PREDICTED: scarecrow-like protein 9
TrEMBLK7TU120.0K7TU12_MAIZE; GRAS transcription factor
STRINGGRMZM5G895672_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23131297
Representative plantOGRP1981522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-121GRAS family protein