PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G884137_P01
Common NameLOC100304401, ZEAMMB73_964587, Zm.32364
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 599aa    MW: 62389.5 Da    PI: 8.896
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G884137_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.2e-0585107123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C+ C+k F r  nL+ H r H
  GRMZM5G884137_P01  85 FVCEVCSKGFQREQNLQLHRRGH 107
                        89*******************88 PP

2zf-C2H211.60.00088162184123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC +C+k++  +s+ k H + +
  GRMZM5G884137_P01 162 WKCDKCSKRYAVQSDWKAHSKIC 184
                        58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.08E-884107No hitNo description
Gene3DG3DSA:3.30.160.603.0E-584107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.008685107IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.03285107IPR007087Zinc finger, C2H2
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
SMARTSM00355140127157IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-4150183IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.08E-8157182No hitNo description
SMARTSM00355140162182IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MMASNSPAAA FFGVRDGDQQ DHQIKPLISP QQQQQLAAAL PSVASGQGAP TAAAQPPPKK  60
KRTMPDPDAE VIALSPKTLM ATNRFVCEVC SKGFQREQNL QLHRRGHNLP WKLKQKDPLQ  120
AQRRRVYLCP EPTCAHHDPA RALGDLTGIK KHFSRKHGEK KWKCDKCSKR YAVQSDWKAH  180
SKICGTREYR CDCGTLFSRR DSFITHRAFC DALAQESARL PPTSSLSNLT SHLYGAATNA  240
GNMALSLSQV GSHLTSTLQD GHHHRPSPEL LRLGATAGGG GGSSIAARLD HLLSPNGASA  300
FRPAQPPSFF HNAGASVGQD FGDDAGNGPH SFLQLQANKP FHGLLMQLPD LQGNGAGGPG  360
ASGGPSSLFS LGFFANNGNS SSGSSHEHAS QGLMNSDQFS GGGSEAQAAA GIFGGNFVSA  420
GGDQVPPPGL YRDQASMLPQ MSATALLQKA AQMGATTSAN GASAASMFRG FAGSSPQHVR  480
PATPHMEQSD ANLNDLMNSL AGGGGLGAGG GMFGGGSNGA GHAGMFDPRQ LCDMAEREGK  540
FGFGQGGGGD ITRDFLGVGG GGLVRGISTP RGDHQSSSDM SSMEAELKSA SSFNGGRMP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-35158228370Zinc finger protein JACKDAW
5b3h_F1e-35158228370Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.323640.0aerial organ| endosperm| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G884137
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G884137_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0610500.0BT061050.1 Zea mays full-length cDNA clone ZM_BFb0091K24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001159309.10.0naked endosperm2
RefseqXP_008662091.10.0naked endosperm2 isoform X1
RefseqXP_008662092.10.0naked endosperm2 isoform X1
RefseqXP_008662093.10.0naked endosperm2 isoform X1
RefseqXP_008662094.10.0naked endosperm2 isoform X1
TrEMBLC0HFE40.0C0HFE4_MAIZE; Naked endosperm2
STRINGGRMZM5G884137_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333798
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14580.27e-99C2H2-like zinc finger protein