PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G880069_P02
Common NameLOC100192894, WRKY109
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 369aa    MW: 39393.5 Da    PI: 10.3755
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G880069_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.4e-31299356359
                        -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +d  ++++tYegeHnh+
  GRMZM5G880069_P02 299 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDSAMLIVTYEGEHNHT 356
                        9*************************988****************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.0E-15249295IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.4E-33285356IPR003657WRKY domain
PROSITE profilePS5081129.987292358IPR003657WRKY domain
SuperFamilySSF1182901.57E-26295356IPR003657WRKY domain
SMARTSM007742.6E-37297357IPR003657WRKY domain
PfamPF031061.6E-26299355IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MEEVEEANRE AVESCRRVLA LLSHPHDPAQ VRSIALGTDE ACTKFRKVVS LLSNGEVGTG  60
EAGPSGTSAS ASHPRAKLVS RRQNPGFLTQ KGFLDSNTPV VVLNSAAHPS PTSAQVHPRA  120
GALDTEGVHP LGVGGPPKLV QPLSAHFQFG NVSSRYQQLP SHHHRHQQQE KLQAAEMFKR  180
SNSGINLKFE SASGTGTMSS ARSFLSSLSM DGSVVASLDG KLPSSSSSFR LIGAPAMSDP  240
ANAAQQAPRR RCTGRGKDGT GKCALAGRCH CSKRSKKLRV KRSIKVPAVS NKIADIPPDE  300
YSWRKYGQKP IKGSPHPRGY YKCSSVRGCP ARKHVERCVD DSAMLIVTYE GEHNHTGMPA  360
QSAAAAAQV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-20290360776WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.312630.0meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G880069
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G880069_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0349950.0BT034995.1 Zea mays full-length cDNA clone ZM_BFb0031D13 mRNA, complete cds.
GenBankBT0836140.0BT083614.1 Zea mays full-length cDNA clone ZM_BFb0019G16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001131554.10.0uncharacterized protein LOC100192894
RefseqXP_008681073.10.0putative WRKY DNA-binding domain superfamily protein isoform X1
TrEMBLB4FD070.0B4FD07_MAIZE; Putative WRKY transcription factor 74
STRINGGRMZM5G880069_P030.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28593887
Representative plantOGRP18171541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.13e-56WRKY DNA-binding protein 74