PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G879527_P01
Common NameLOC100279237
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 347aa    MW: 36236.3 Da    PI: 6.9138
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G879527_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.95.6e-06309332629
                        HHHHHHHHHHHHHHHHHHHCTSCC CS
                HLH   6 nerErrRRdriNsafeeLrellPk 29 
                        +++Er RR +i +++ +L+el+P 
  GRMZM5G879527_P01 309 SIAERVRRTKISERIRKLQELVPD 332
                        689********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.007303347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-5306335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.00125307337No hitNo description
Gene3DG3DSA:4.10.280.103.7E-5308334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MYGSPVSKDL NLPAQPPPMA SSGLLRYRSA PSAVLGGLCE DQLQLPAAAP SAADNVFSRF  60
LPDHHIRDDK PSPAHFPSAA DMASHHQQEQ MMFHSQSQSQ HQQETGRSGG GLYRTVSSGM  120
EAGGTGVGAA SSLIRQSSSP AGFLDHFGMD NGYGAMLRAS MGMGFQDGGA SDSLAGGGGG  180
SGRLGGQLSF SSRQGSLMSQ ISEMDSQEDV VGASSPDAGG GGDAAYMPGY PMSSGGWDDS  240
SSALLPDSLP ATNKRPRDSL EHGGGLAHQF SLPKTSSSEV AAIEKFLQFQ DAVPCKVRAK  300
RGCATHPRSI AERVRRTKIS ERIRKLQELV PDMDKVTAPA PTGFSAR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1234850.0cell culture| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G879527
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G879527_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0645780.0BT064578.1 Zea mays full-length cDNA clone ZM_BFc0184N05 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008672511.10.0PREDICTED: uncharacterized protein LOC100279237 isoform X1
RefseqXP_008672518.10.0PREDICTED: uncharacterized protein LOC100279237 isoform X1
RefseqXP_008672522.10.0PREDICTED: uncharacterized protein LOC100279237 isoform X2
TrEMBLC0P8F90.0C0P8F9_MAIZE; Uncharacterized protein
STRINGGRMZM5G879527_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.13e-32bHLH family protein