PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G856837_P01
Common NamebHLH129, LOC100282509
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 235aa    MW: 25684.2 Da    PI: 5.4464
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G856837_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.6e-1169116454
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        ++  rE+ RRd++N++f eL +++ +    +  Kl+Ka iL  A + + +L
  GRMZM5G856837_P01  69 SKACREKMRRDKLNDRFLELSSIMNPG---KEAKLDKANILSDAARMVAQL 116
                        6789**********************9...9**************999888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.32E-1363132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.0365116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.43E-868121No hitNo description
Gene3DG3DSA:4.10.280.107.4E-1369138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-969116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-871122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MMDCAGGRDP VEDFLLGGAG AGDDGDLVAV FCDDGGLGIE GIHGDACGFE QSNLGKRGRD  60
EPCSSGPTSK ACREKMRRDK LNDRFLELSS IMNPGKEAKL DKANILSDAA RMVAQLRGEA  120
EKLKESNEKL RENIKDLKEE KNELREEKVR LKVEKDRLEQ QVKAMSVAPT GYVPHLPHPA  180
SYHPAAFTPF APPQQAPANK SAPIPAPFPG MAMWQWLPPT IVDTTQDPKL WPPNA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1372220.0meristem| pollen| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G856837
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G856837_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9655850.0EU965585.1 Zea mays clone 287196 DNA binding protein mRNA, complete cds.
GenBankBT0409200.0BT040920.1 Zea mays full-length cDNA clone ZM_BFc0152D09 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001150072.11e-174DNA binding protein
RefseqXP_008643673.11e-174PREDICTED: DNA binding protein isoform X1
SwissprotQ9FH373e-59ILR3_ARATH; Transcription factor ILR3
TrEMBLB4FUY21e-174B4FUY2_MAIZE; BHLH transcription factor
STRINGGRMZM5G856837_P011e-173(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81733646
Representative plantOGRP7551766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.12e-44bHLH family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]