PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G853066_P01
Common NameMADS64
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family M-type_MADS
Protein Properties Length: 278aa    MW: 30065.3 Da    PI: 7.7452
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G853066_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.42.1e-191151343
                       --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
             SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                       i n+s r  tf kRr+g++KKA+EL +LCd++++v++++++
  GRMZM5G853066_P01 11 IANDSTRRATFKKRRKGLMKKASELATLCDVDACVVVYGEE 51
                       89*************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-23160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.516150IPR002100Transcription factor, MADS-box
CDDcd002661.22E-33285No hitNo description
SuperFamilySSF554552.09E-24395IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-11323IPR002100Transcription factor, MADS-box
PfamPF003194.4E-191151IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-112338IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-113859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MARKKVTLQW IANDSTRRAT FKKRRKGLMK KASELATLCD VDACVVVYGE EESQPEVWPD  60
VAEAARVLAR FKAMPELDQC KKMMDMEGFL NQRIDKLKEQ LHKAQRENRE RETTLLLHDA  120
IVGRRPGLAG LSAEEIAGLG WMVENRLHGV REAIERLQAA ADKGGQGQQF SGVPPTSLQL  180
QLPYSIIGPA GHTDVHHQAP PPHPHPHPHP QGSWLMEVAK AGGDLGALVY SGFGGGRGSV  240
GGAGGTSTEV ADMLPHLGGF GAGFGWPDPG LSPPFPPM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVTLQWIANDSTRRATFKKRR
22125KKRRK
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G853066
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G853066_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277160.0KJ727716.1 Zea mays clone pUT5655 MADS transcription factor (MADS64) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008646559.10.0agamous-like MADS-box protein AGL80
TrEMBLA0A060D1450.0A0A060D145_MAIZE; Agamous-like MADS-box protein AGL80 (Fragment)
STRINGGRMZM5G853066_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-37AGAMOUS-like 80