PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G839969_P01
Common NameLOC103628691, MADS66
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family M-type_MADS
Protein Properties Length: 287aa    MW: 30574.1 Da    PI: 7.6021
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G839969_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.67.6e-191150342
                       --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
             SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                       i n+s r  tf kRr+g++KKA+EL +LCd++++v++++ 
  GRMZM5G839969_P01 11 IANDSTRRATFKKRRKGLMKKASELATLCDVDACVVVYGD 50
                       89************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.0E-23160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.446150IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.1E-24186IPR002100Transcription factor, MADS-box
CDDcd002663.27E-33286No hitNo description
PRINTSPR004045.6E-11323IPR002100Transcription factor, MADS-box
PfamPF003195.8E-191150IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-112338IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-113859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MARKKVTLQW IANDSTRRAT FKKRRKGLMK KASELATLCD VDACVVVYGD GESQPEVWPD  60
DVAKAAQVLA RFKAMPELDQ CKKMMDMEGF LNQRIDKLRE QLRKARRENH ERETALLLHD  120
AIAGRRPGLA GLSVEEIAGL GWMVENRLNG VKDAIERLQA ATAGKGGQDV VLPDPATATT  180
NLQLQLPQVS LLPLVPYSVD APAEHGHAGV VHEAAAQPQA PSWLMEVAKA GGDLGALVYS  240
GFGGGRGSFG GAGGTSVGVV ADMLPHLGNL GAGFGWADPG LSPFPPI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVTLQWIANDSTRRATFKKRR
22125KKRRK
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G839969
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G839969_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275260.0KJ727526.1 Zea mays clone pUT5386 MADS transcription factor (MADS66) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008647071.10.0agamous-like MADS-box protein AGL80
TrEMBLA0A060D0N90.0A0A060D0N9_MAIZE; Agamous-like MADS-box protein AGL80 (Fragment)
TrEMBLA0A3L6ENA80.0A0A3L6ENA8_MAIZE; Agamous-like MADS-box protein AGL80
STRINGGRMZM5G839969_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.16e-36AGAMOUS-like 80