PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G839518_P02
Common NameLOC103627314, Zm.95992
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 489aa    MW: 51005.1 Da    PI: 4.7989
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G839518_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-11309354555
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        h+++Er RR++i +++ +L+el+P++      + +Ka++L + +eY+k Lq
  GRMZM5G839518_P02 309 HSIAERLRREKISDRMKNLQELVPNS-----NRTDKASMLDEIIEYVKFLQ 354
                        99***********************7.....59*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.25E-12302358No hitNo description
SuperFamilySSF474597.07E-17302365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.079304353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-16306364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.3E-9309354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-13310359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MDGFVDPFVP EQAWPQDAMF IGSSWPCAGA GATSLADPAG TYAYLGAQAA PGQGAGFHLQ  60
DGSSTALVPP LELHQQFLSA HLPGDDVTVT QEEGLGFEVN SALVAGMLGP VLSAPCAVSL  120
ADSAPVVCSS SNDSSGGSEQ SGLPPPPRFL VLGEQPASWP SAFPRISSLA GEETSRSFGF  180
GAVSDNDLVR GSSCVADVNK YPQIGNARLH VEDDVEFNTG KMLSFAPGLD FGDLQLSQKE  240
LSGLRHLNSG QQLSSFDATR NPEQSSNEAS GGGTGLNAPP FMVPANGAAG NGAPKPRVRA  300
RRGQATDPHS IAERLRREKI SDRMKNLQEL VPNSNRTDKA SMLDEIIEYV KFLQLQVKVL  360
SMSRLGATEA VVPLLTQSQT ENSGGGLLLS PRSGSGRQQQ ARGGSLPPPS SEVRDGAAFE  420
QEVAQLMESD MTTAMQYLQS KGLCLMPVAL ASAISGQKGA SSAAVQPENG GAKEMLRAVK  480
PLASPIHGR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.959920.0ear| endosperm| meristem| pollen
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G839518
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G839518_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9749560.0EU974956.1 Zea mays clone 461679 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008645842.10.0PREDICTED: uncharacterized protein LOC103627314 isoform X2
TrEMBLA0A096UAV90.0A0A096UAV9_MAIZE; Uncharacterized protein
STRINGGRMZM5G839518_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32543879
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.12e-54LJRHL1-like 3