PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G834874_P01
Common NameZm.86419
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family B3
Protein Properties Length: 937aa    MW: 104187 Da    PI: 7.0309
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G834874_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.19.9e-118729313597
                        EEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
                 B3  35 tltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                         ++l+d++ r W v +    +   + +t+GWk+Fv +n+L++gD++ +   ++ +++e+v +v+
  GRMZM5G834874_P01 872 VIMLKDPKKRLWPVVY--HDSLLFVGFTAGWKHFVASNDLRAGDVCELV--KEpDDGEPVYSVR 931
                        5899************..999999**********************998..5668888888776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.051205298IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.9E-12208299IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-11218300IPR015300DNA-binding pseudobarrel domain
CDDcd100176.37E-6238295No hitNo description
Gene3DG3DSA:2.40.330.103.1E-10841923IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-10871932IPR015300DNA-binding pseudobarrel domain
PfamPF023621.3E-7872931IPR003340B3 DNA binding domain
CDDcd100171.90E-9872931No hitNo description
PROSITE profilePS508639.812873934IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 937 aa     Download sequence    Send to blast
MGGGNEFLVG MTGSAPDSAR QKRCHDTANG EVRDGDTVVK NGKTSDAASV EKREKKEHLF  60
KCSAYHGKDT DMWSGDQRIN KSRVPAALCE QGREMDDDLN KTNSKERMMG VELDKEKTIT  120
SDDCSKVEGK KKFNTASPEE ERKKKPHNAS TGKNMQRDDD KEVVRIMSNS DTKVKIKKVS  180
TPLPKKEKNK EKLNKTYREK KMQAADSKMR SCYSGVKKGK VIPRIVAPRL EYLTNQLVYL  240
KDSKGKCLKV LVSKVVDSLA FDQGWDVFVS NHLIKWGEFL LFEYIAERTF SVRVFGTDSC  300
ERLDFNPEST NKGETKKQAW SNMPPDDLVV TDGISENSGY YVSGECPRTK VPQTCHVTCN  360
TKKDPKRVER VVGSGPVAQD ISGNLIGPQC KTKGTPLCSK GKTVIMIIDS EDSEPSAHEK  420
EDTMKLATSG PDSDISLVAV NTNEDPIRAQ SGIGNGPSAV LADEKGNFPE IECGTKCISA  480
TCSEVKTVSQ IISATALLDL HDSDENLGRK QRTNAIPLDS RTTAEDYHNY SKMIIIQNFN  540
RKYEAPGGFR CLEKWRKDVV NNQTALDCTA PIKHENPQKT DGMLVDGYGL IELNPVDEYI  600
CSEGNHECVQ PVFTMPIKEP SSADRVIDCG RDGTEINYSI NEKDGEVDTK CIQTRPYDVK  660
ASVLFHSKEE EFIAVVLLFY LKQKENKPMG SIVHSQSNNV WLSANPVVAG KYAALGLNPS  720
RSEGSCAFIE SMLTGSIEKT SSPDEISKCK NSMMETAHNV NGKGGGTTAQ FETKMDQAEP  780
ARSGVRSKIC NSVVPANESE HRSTKQEGRM SSNREVPESL LPTKDEIPEP DHHSPPEINF  840
QLCIPDTTQK WLDLSKSLSN AVRRQRRHDY DVIMLKDPKK RLWPVVYHDS LLFVGFTAGW  900
KHFVASNDLR AGDVCELVKE PDDGEPVYSV RMSDHKI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129144KKKFNTASPEEERKKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.864190.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G834874
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G834874_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT9896782e-83KT989678.1 Zea mays centromere 10 B73 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008647107.10.0PREDICTED: B3 domain-containing protein Os02g0598200-like
TrEMBLA0A096UA900.0A0A096UA90_MAIZE; Uncharacterized protein
STRINGGRMZM5G834874_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1458744
MonocotsOGMP122722730