PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G828396_P01
Common NameIDP168
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 404aa    MW: 42836.7 Da    PI: 5.1988
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G828396_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.13.6e-09204251455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR+ri +++  L++l+P +    +k   Ka +L + ++Y++sLq
  GRMZM5G828396_P01 204 SHSLAERVRRERISQRMKVLQDLVPGC----NKVIGKALMLDEIINYVQSLQ 251
                        8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-16198265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.84E-10198255No hitNo description
PROSITE profilePS5088815.301200250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.7E-16200263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-6204251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.0E-10206256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MKEGRPGAGD YIASLLSSSP RLDFGGEEEE DCLDRFCGDP GFAARAARLS SFSGQRFAVT  60
AGLFGLPPPL PAASGGGEFA GSREASSVSD PASAMKDANA KKRKAPAAAA AKGKGREPSA  120
QAQAGEPKGP DAKRCCKAEG GEGEEGSPVK LPKPEQAGSD SSVEDGGAQN QKPPPPVKGK  180
NAKPVEPPRD YVHVRARRGQ ATDSHSLAER VRRERISQRM KVLQDLVPGC NKVIGKALML  240
DEIINYVQSL QRQVEFLSMK LATVNPLDLS NLPTLLQKDM FQACGASASS VFSLESCSPG  300
FPFGGQGDVF QSFVPNGLEN PCGGLNPLDL ALSQATGGQF GFQDGTAGTN LQQRNYWEEE  360
EEDLQSVFHI DDNGQSQEHG ASASAQSFHG QLQPQEGHMK MEFF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.403610.0ear
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G828396
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G828396_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0361180.0BT036118.1 Zea mays full-length cDNA clone ZM_BFb0096I10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001132323.10.0uncharacterized protein LOC100193765
TrEMBLB4FG800.0B4FG80_MAIZE; Uncharacterized protein
STRINGGRMZM5G828396_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48560.12e-49bHLH family protein