PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G821024_P01
Common NameLOC100285024
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bZIP
Protein Properties Length: 331aa    MW: 35624.6 Da    PI: 6.6094
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G821024_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.91.4e-10172230563
                        CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                        kr++r   NR +A rs +RK +++ eLe+kv++L++e ++L  +l  l+   + l++e+
  GRMZM5G821024_P01 172 KRAKRILANRQSAARSKERKIKYTSELERKVQTLQTEATTLSAQLTLLQRDTSGLTTEN 230
                        9**********************************************999888888776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.5E-15168232IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.013170233IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.1E-10172226No hitNo description
PfamPF001702.4E-9172230IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.85E-11172223No hitNo description
CDDcd147033.47E-25173222No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007231Biological Processosmosensory signaling pathway
GO:0008272Biological Processsulfate transport
GO:0009294Biological ProcessDNA mediated transformation
GO:0009652Biological Processthigmotropism
GO:0009970Biological Processcellular response to sulfate starvation
GO:0045596Biological Processnegative regulation of cell differentiation
GO:0051170Biological Processnuclear import
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003682Molecular Functionchromatin binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
GO:0051019Molecular Functionmitogen-activated protein kinase binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MDLRFPPPAP SSCFGGGGVL PARGHHRRAQ SETFIRLPDA DLLLDPDADF GFSDIDFPSL  60
SDDSPAASDP TPQPQAPPPQ QPLPQAASPA SAAPPRPPSG AHMRSLSLDA AFFDGLSLQG  120
GGGVAGHKRS GSMDGATSPF EGESAPTSVL PDYAKKAVPD DRLAELALLD PKRAKRILAN  180
RQSAARSKER KIKYTSELER KVQTLQTEAT TLSAQLTLLQ RDTSGLTTEN RELKLRLQAM  240
EEQAKLRDAL NDALREEVQR LKIATGQVPN INGNPFNGGL PQQQQVPSYF SQPQGMQYFS  300
SHQGQHQHPN HHPQSSSNGG GQSLSDSMDF M
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.977770.0cell culture| meristem| ovary| pericarp
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G821024
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00184DAPTransfer from AT1G43700Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G821024_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0656990.0BT065699.1 Zea mays full-length cDNA clone ZM_BFc0032M22 mRNA, complete cds.
GenBankKJ7276160.0KJ727616.1 Zea mays clone pUT5527 bZIP transcription factor (bZIP23) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151391.20.0transcription factor RF2b
TrEMBLA0A1D6EHU00.0A0A1D6EHU0_MAIZE; Transcription factor VIP1
TrEMBLA0A3L6FZV10.0A0A3L6FZV1_MAIZE; Transcription factor VIP1
STRINGGRMZM5G821024_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19253892
Representative plantOGRP12617181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43700.11e-50VIRE2-interacting protein 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]