PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G818643_P01
Common NamebHLH86, LOC100383089
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 434aa    MW: 45645.9 Da    PI: 6.2501
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G818643_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.2e-09262310355
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  GRMZM5G818643_P01 262 NSHSLAERLRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 310
                        58*************************9....556*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.41E-17257327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.02E-11257314No hitNo description
PROSITE profilePS5088815.65259309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16260326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-7262310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-11265315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MDMNESGEKG MEGNASSGIP VDWQTQFSAA AFSCAPPQQQ QVPMMDSAFA SAGLWASTSQ  60
AMALSDAGGR SAARAGFLAP VPGFLPQGLA HFPVDSGFIE RAARASCFGG GGGGGVMAAF  120
GAAADHQPMN SAFSGSSEAL LDHQRTKDGS DKGEPELGRN GHDGVLSSEA AAAGDCSSKG  180
TSDSKKRRRP NEVMGGDQVQ SSNLPADSAN ESVHSKDKGE ESSLATTTTG PGKSKGKGAR  240
ETSESQKEDY IHVRARRGQA TNSHSLAERL RREKISERMK LLQDLVPGCS KVTGKAVMLD  300
EIINYVQSLQ RQVEFLSMKL ATVNPRLDLN IEGLLSKDLL RFPGVPSSSL GFSPEMMHPQ  360
LQLSQPGLIQ GGAAGMANPD VFRRIMQAQL SAKDGSQMPP HALNGAFSDV AQQQMAYPSS  420
QDLSIGPSQD GFQM
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.32220.0ear| endosperm
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G818643
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G818643_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7267900.0KJ726790.1 Zea mays clone pUT2275 bHLH transcription factor (bHLH86) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460392.10.0hypothetical protein SORBIDRAFT_02g027430
TrEMBLA0A060CUY10.0A0A060CUY1_MAIZE; BHLH transcription factor (Fragment)
STRINGGRMZM5G818643_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
MonocotsOGMP29093785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-57bHLH family protein