PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G812883_P01
Common NameZEAMMB73_235769
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 288aa    MW: 31200.9 Da    PI: 7.6233
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G812883_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.13.2e-08168208954
                        HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         r RR+ri ++   L++l+P       +K++ a++L +A++YIk L
  GRMZM5G812883_P01 168 ARHRRERISERVRVLQRLVPGG-----TKMDTASMLDEAIRYIKFL 208
                        699*****************87.....8****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.92E-11150213No hitNo description
PROSITE profilePS5088815.301159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.19E-14164218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-13165217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.9E-14165214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-5169208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MNNITQHNSS SSWDLDMSLG THHHPLLFDS HPNPGPPPPP PLSFHLSSSS HHPPAPHPAH  60
HHPSLGPSLS SSLFPQPPHH HHHRLHRLGL DIDDPSSHSH GHRGNDELEE MRKQHEAAAE  120
HVDEELGAMK EMMYRIAAMQ PVDIDPATVK KPRRRNVRIS EDPQSVAARH RRERISERVR  180
VLQRLVPGGT KMDTASMLDE AIRYIKFLKR QVQELQHPAH AAAGAGAGPS VSAVGGLPLI  240
DWAGLVRPVD IHGPTSPSSS SSMGGAGAHA ALGFGFSSAG GQSSHGMH
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.27201e-161embryo
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G812883
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G812883_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269700.0KJ726970.1 Zea mays clone pUT3671 bHLH transcription factor (bHLH85) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008678339.10.0PREDICTED: transcription factor IND-like
TrEMBLK7UC520.0K7UC52_MAIZE; Putative HLH DNA-binding domain superfamily protein
STRINGGRMZM5G812883_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90513246
Representative plantOGRP7611568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09750.15e-41bHLH family protein