PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G475289_P02
Common NameZm.38338
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 310aa    MW: 33074.6 Da    PI: 10.2027
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G475289_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.91e-14135186155
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +r++h ++Er+RR+ +N+ ++ Lr+l+P++   + ++ + a+++  A++Y+k+L+
  GRMZM2G475289_P02 135 QRMTHIAVERNRRRLMNDHLASLRSLIPSS---YTPRGDQATVVGGAIDYVKQLE 186
                        79****************************...9*******************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.02E-15126194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.69E-13133187No hitNo description
Gene3DG3DSA:4.10.280.109.1E-15133189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.072134185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-12135186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-9140191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MMCLSCSPSG DGVVMTTVAV MEQWADKQQQ AASTNAAAAA AQMPFLALLQ GAGVVVEAEQ  60
QEEQHHDGRK RQAFARAVSD LDLLESCVTQ AVAPAAAASA PVAGRTERRR KRQRPRARAA  120
PPPEKRKKPE EAESQRMTHI AVERNRRRLM NDHLASLRSL IPSSYTPRGD QATVVGGAID  180
YVKQLEQQLV ALQAAAAARR GVAGTGAAAV ATVASDGVFV SPQYASYSDS RGAGAGVDVE  240
ATAAVGGHVR VRVAGRRWPG RLVRVVAALE DLRLAVLHLA VTSVGHDAVV YCFNLKVSPV  300
SRRFYFWSCS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107117RRRKRQRPRAR
2109115RKRQRPR
3109127RKRQRPRARAAPPPEKRKK
4135146RMTHIAVERNRR
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G475289
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G475289_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU7286910.0EU728691.1 Zea mays RFLP marker p-umc164 full length insert sequence of entire PstI fragment genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008650321.10.0PREDICTED: transcription factor bHLH57-like isoform X2
TrEMBLA0A096TZQ30.0A0A096TZQ3_MAIZE; Uncharacterized protein
STRINGGRMZM2G475289_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79573344
Representative plantOGRP1417044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.19e-29bHLH family protein