PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G475289_P01
Common NameZm.38338
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 303aa    MW: 32489.9 Da    PI: 10.7239
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G475289_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.99.8e-15128179155
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +r++h ++Er+RR+ +N+ ++ Lr+l+P++   + ++ + a+++  A++Y+k+L+
  GRMZM2G475289_P01 128 QRMTHIAVERNRRRLMNDHLASLRSLIPSS---YTPRGDQATVVGGAIDYVKQLE 179
                        79****************************...9*******************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.81E-16119187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.8E-15126182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.50E-12126180No hitNo description
PROSITE profilePS5088815.072127178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-12128179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-9133184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0009025anatomyvascular leaf
PO:0020040anatomyleaf base
PO:0020127anatomyprimary root
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MERMQLQLQG SIASSLWADK QQQAASTNAA AAAAQMPFLA LLQGAGVVVE AEQQEEQHHD  60
GRKRQAFARA VSDLDLLESC VTQAVAPAAA ASAPVAGRTE RRRKRQRPRA RAAPPPEKRK  120
KPEEAESQRM THIAVERNRR RLMNDHLASL RSLIPSSYTP RGDQATVVGG AIDYVKQLEQ  180
QLVALQAAAA ARRGVAGTGA AAVATVASDG VFVSPQYASY SDSRGAGAGV DVEATAAVGG  240
HVRVRVAGRR WPGRLVRVVA ALEDLRLAVL HLAVTSVGHD AVVYCFNLKV SPVSRRFYFW  300
SCS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100110RRRKRQRPRAR
2102108RKRQRPR
3102120RKRQRPRARAAPPPEKRKK
4128139RMTHIAVERNRR
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G475289
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G475289_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU7286910.0EU728691.1 Zea mays RFLP marker p-umc164 full length insert sequence of entire PstI fragment genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008650321.10.0PREDICTED: transcription factor bHLH57-like isoform X2
TrEMBLA0A096TZQ20.0A0A096TZQ2_MAIZE; Uncharacterized protein
STRINGGRMZM2G475289_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.12e-28bHLH family protein