PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G471635_P01
Common NamebHLH113, LOC103653294, ZEAMMB73_030191
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 241aa    MW: 25987.4 Da    PI: 8.5045
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G471635_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.61.1e-08168208954
                        HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  GRMZM2G471635_P01 168 ARMRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 208
                        699*****************87.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.085159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-12164218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-14164220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-13165214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-6168208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.79E-6182213No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MDFDMLNSHP EAQLELMKAM LQLEQLTAFP LPDHGAMMMV PSTPPSPGMP QATTHHHYFS  60
SVPHHMSAGA NGRGVYDDDH QYSQGTAAPC NGSARSSEYV AHAQGPVAGG GNSGESTAAT  120
SVGSSSSAMR EMIFRVAALQ PVNIDPEMVR PPKRRNVRIS TDPQSVAARM RRERISERIR  180
ILQRLVPGGT KMDTASMLDE AIHYVKFLKT QVQSLERAAA ASGRRPAAPA VADNGAMNGQ  240
W
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149154RPPKRR
2168173RMRRER
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G471635
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G471635_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269730.0KJ726973.1 Zea mays clone pUT3674 bHLH transcription factor (bHLH113) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008678454.11e-179PREDICTED: transcription factor HEC2-like
TrEMBLK7UTQ71e-179K7UTQ7_MAIZE; BHLH transcription factor
STRINGGRMZM2G471635_P011e-179(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7611568
MonocotsOGMP31033682
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.14e-37bHLH family protein