PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G465595_P01
Common NameLOC103633308, Zm.126628
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 452aa    MW: 47207.5 Da    PI: 10.2264
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G465595_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.27.7e-0778100123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        y+C++Cg+ F r  nL+ H r+H
  GRMZM2G465595_P01  78 YVCEICGQGFQREQNLQMHRRRH 100
                        9*********************9 PP

2zf-C2H210.70.0017183205123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C  C k +  +s++k H++t+
  GRMZM2G465595_P01 183 WVCARCAKGYAVQSDYKAHLKTC 205
                        58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.85E-777100No hitNo description
Gene3DG3DSA:3.30.160.601.5E-577100IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.75978100IPR007087Zinc finger, C2H2
SMARTSM003556.5E-478100IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
SMARTSM00355110147177IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.85E-7178203No hitNo description
SMARTSM00355270183210IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MALLVKSHHQ MLVSSSTSSS SPSASQQRQP PPPPPSSSCL TEQQPSPAKR KRRPPGTPDP  60
DAEVVALSPR TLLESDRYVC EICGQGFQRE QNLQMHRRRH KVPWRLVKRA PPPPAAAAGG  120
GGGAADANNS SGTGGGAGGG APRKRVFVCP EPSCLHHDPA HALGDLVGIK KHFRRKHGGR  180
RQWVCARCAK GYAVQSDYKA HLKTCGTRGH SCDCGRVFSR VESFIEHQDA CNSSRMRGEA  240
VVVAVPVPVP PPSALPVIRP AVPRHPPTVA VAPPPPPVLQ LLPASAAASA PRTSSATTTA  300
SPSTTTTASH HQAKPHAATT TKLQLSIGPI VTAAAAAAVD CGEDESEAEE LRRAVEEKAA  360
ADAARERARG EAAAAERALD EARRARQRAR ADLEKACALR DHAARLLGQV TCHACRHRSL  420
AVAVVRGAAE GHAAGPAVAC DSIRGGGLGA GI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-17179233357Zinc finger protein JACKDAW
5b3h_F6e-17179233357Zinc finger protein JACKDAW
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G465595
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G465595_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0871650.0BT087165.2 Zea mays full-length cDNA clone ZM_BFb0183A11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008653253.20.0protein indeterminate-domain 16
TrEMBLA0A1D6JVG30.0A0A1D6JVG3_MAIZE; Protein SHOOT GRAVITROPISM 5
TrEMBLA0A317Y4Z40.0A0A317Y4Z4_MAIZE; Protein SHOOT GRAVITROPISM 5
STRINGGRMZM2G465595_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105138124
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.14e-86C2H2-like zinc finger protein