PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G463133_P01
Common NameZEAMMB73_114445
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 413aa    MW: 43369.5 Da    PI: 5.5286
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G463133_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.63e-10246290554
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        h   Er+RR+++N +f++Lr+llP++     +K +K ++L  A  Y+  L
  GRMZM2G463133_P01 246 HMLSERKRREKLNGSFHTLRSLLPPC-----PKKDKTTVLMNAASYVMAL 290
                        6678*********************9.....7999*********999877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-16239307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.005241290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-8246290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-15246306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.89E-10246295No hitNo description
SMARTSM003533.3E-11247296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MDEVWRGLDL QLQAGDIDGL HPVSDPFWPA LAECSASFLA AVDDTACFGI ANMDLTAASA  60
DAAAGKSDGV DTSAFFAHND HRGALPMRQD EQQPVYSSSS LSSTRSLSID SGGSSSTFFP  120
LDYDAVAALP AATFSPAPLQ LQQDPFAGDE EAMMLAMLAV ISSAASTSPS SSESSSPLHR  180
AAAAVQPRLH PHGGDDSASH VTVRSTSLAV APERTTSAAD AAGQQDDACK AAAAAAGSNN  240
SSQVYHMLSE RKRREKLNGS FHTLRSLLPP CPKKDKTTVL MNAASYVMAL EAQVSELEDK  300
NSKLQRYVPC GDGGGGGGAT TATAAHRRAR VHISRAASDE QQVSLMVMVM VECDIVDLVL  360
HVLERLRWTS GVSVLSVNAD TYSPQALLKA LANIKLHIMD TATAGTRRCS ARP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1249254ERKRRE
2250255RKRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1375771e-165meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G463133
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G463133_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0544161e-162BT054416.1 Zea mays full-length cDNA clone ZM_BFc0045O17 mRNA, complete cds.
GenBankKJ7280181e-162KJ728018.1 Zea mays clone pUT6154 bHLH transcription factor (bHLH94) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008656612.10.0PREDICTED: putative transcription factor bHLH041
TrEMBLK7VYY90.0K7VYY9_MAIZE; Putative HLH DNA-binding domain superfamily protein
STRINGGRMZM2G463133_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1200956
MonocotsOGMP101743136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.13e-19bHLH family protein