PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G458087_P01
Common NameZEAMMB73_627460
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family TCP
Protein Properties Length: 164aa    MW: 18829.4 Da    PI: 8.62
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G458087_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP72.11.8e-2225911472
                TCP 14 kvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssase 72
                       ++g+Rd R+Rls+ +a++f +Lqd+LGfdk+skt++WLl q+kp i+ l++         +++s++e
  GRMZM2G458087_P01 25 AQGLRDCRMRLSVGVAREFLALQDRLGFDKASKTLNWLLAQSKPPIDCLVDAadqilgvgKTTSQQE 91
                       89***********************************************999555555542222212 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136919.483173IPR017887Transcription factor TCP subgroup
PfamPF036345.4E-2125111IPR005333Transcription factor, TCP
SMARTSM002711.7E-875132IPR001623DnaJ domain
PROSITE profilePS5007611.9976143IPR001623DnaJ domain
PRINTSPR006251.7E-87896IPR001623DnaJ domain
PfamPF002266.4E-1279120IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1104.0E-1379114IPR001623DnaJ domain
SuperFamilySSF465651.27E-1379121IPR001623DnaJ domain
CDDcd062572.57E-1179112IPR001623DnaJ domain
PRINTSPR006251.7E-896111IPR001623DnaJ domain
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MPASRLRPYY RRVVPDDSAQ QDPHAQGLRD CRMRLSVGVA REFLALQDRL GFDKASKTLN  60
WLLAQSKPPI DCLVDAADQI LGVGKTTSQQ EIKKAYHKLA LRLHPDKNLG DEVTEADNEE  120
FEAKYRGSDY EKTDLKDLYT KYKGNMNRNN YLLYHIVKSE TVLL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.398045e-93tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G458087
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G458087_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9614981e-90EU961498.1 Zea mays clone 235951 teosinte branched1 protein mRNA, complete cds.
GenBankKJ7277621e-90KJ727762.1 Zea mays clone pUT5707 TCP transcription factor (TCP11) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D6J5V72e-85A0A1D6J5V7_MAIZE; Chaperone protein dnaJ 6
STRINGGRMZM2G458087_P011e-119(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40523172
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.27e-18TCP family protein