PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G445944_P01
Common NameLOC100278144, TCP4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family TCP
Protein Properties Length: 207aa    MW: 21115.7 Da    PI: 10.8979
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G445944_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP126.42.9e-3931122289
                TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg... 88 
                        a++k +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++  +++s +ss+s  s +   
  GRMZM2G445944_P01  31 AVRKAPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStsSPSSLRSSSS--STAgvh 120
                        789*************************************************************99999888543333333333..111233 PP

                TCP  89 .k 89 
                         +
  GRMZM2G445944_P01 121 pH 122
                        31 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.2093791IPR017887Transcription factor TCP subgroup
PfamPF036341.2E-3337122IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MTTRPDGSAS TPADKQLVAA SNGNGNGNPL AVRKAPSKDR HSKVDGRGRR IRMPIICAAR  60
VFQLTRELGH KSDGQTIEWL LRQAEPSIIA ATGTGTTPAS FSTSSPSSLR SSSSSTAGVH  120
PHAAPAQGFW ALPARADFGQ LWSFAAAPEM MVAAAAAAAP GMAGEASAAR VGNYLPVAQG  180
NLNLLASFSG GPAPTAAAGR AEEETAR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1246720.0sheath
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G445944
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00524DAPTransfer from AT5G23280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G445944_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9721270.0EU972127.1 Zea mays clone 375636 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001144989.11e-146uncharacterized LOC100278144
SwissprotQ9FMX23e-65TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A3L6EWE11e-145A0A3L6EWE1_MAIZE; Transcription factor TCP21
TrEMBLB6U4G21e-145B6U4G2_MAIZE; TCP transcription factor
STRINGGRMZM2G445944_P011e-146(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP194133100
Representative plantOGRP85141016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08330.14e-33TCP family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]