PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G440529_P01
Common NameLOC100277655
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 385aa    MW: 40876.5 Da    PI: 6.4339
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G440529_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.11e-052753121254
                        HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  GRMZM2G440529_P01 275 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 312
                        677888999*******998.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.731263312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.03E-6273317No hitNo description
SuperFamilySSF474592.62E-11273326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0061274318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.8E-9277320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MAEQWWGSAS HRSHGTSACS AAAPPPLTVT GRVACGSTFP TAAVESTSSV TFQDPYRNST  60
HQPLSDAASS LGDPHLDWTQ TFLSGRSDAS FQAVLQEPSA TNDPLIRDHM DMGAGFLADQ  120
AQLAPSPYGG TEPSQAQALF DATAAVHNIL MYGDSESSVS YDAAAASMQF SQLLRTSVPA  180
STPTQGDGVA VGAPMQYLSG SSYLPFGGPL PSHLLLQALQ AAKPNSRSSN ANSPTAKDDC  240
SPPPAATRKS VSEPPAAAKR PRIEAPSPLP TFKVRKEKLG DRITALQQLV SPFGKTDTAS  300
VLHEAIEYIK FLHDQVASLS SPYLKNGIPM KQFQHKGSED SKDNGDTKQD LRSRGLCLVP  360
VASTYTVAAE TPEFWHPTFG GTFRW
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.328300.0cell culture
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G440529
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G440529_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9698010.0EU969801.1 Zea mays clone 335797 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001144636.10.0uncharacterized protein LOC100277655
TrEMBLA0A096TTF50.0A0A096TTF5_MAIZE; Uncharacterized protein
STRINGGRMZM2G440529_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP31351129
MonocotsOGMP29703464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.36e-48bHLH family protein