PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G425366_P01
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 541aa    MW: 60489.3 Da    PI: 5.2866
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G425366_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS69.94.9e-222193412124
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                        ++lL+ cA+av+++d ++a++lL++++++as++gd++qRla++f+++L+arl++++s+l +   +s+    +++e l+a++l+  ++ +   
  GRMZM2G425366_P01 219 RSLLILCAHAVAANDGARARELLKQINQHASETGDATQRLAQCFARGLEARLLGTGSQLWQLQLASDR--LSTAEFLKAHNLYMAACGFNMA 308
                        789***************************************************99999864433333..35999************99888 PP

               GRAS  94 shltaNqaIleavege..ervHiiDfdisqGlQ 124
                               +I++a++ +  + +Hi+D+++  G+Q
  GRMZM2G425366_P01 309 VIGFSTMTIMQAMAMAgrRSLHIVDYGMRFGFQ 341
                        888888888887665544999**********99 PP

2GRAS134.31.4e-41342532184373
               GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                        k++e +  e+L+ +p+E+l+Vn +++  +l+desv  ++  +rd+vL  v++++P+v++ +  + + n+ s+l rf eal yy+a+fd ++a
  GRMZM2G425366_P01 342 KKWELVCNEDLDRRPDEVLVVNDHFNFSTLMDESVFFDNpsPRDTVLLNVRKMRPDVFIQSILN-NSNGCSYLSRFREALFYYTAMFDIFDA 432
                        578888999*************************98877779***************9877655.66999********************** PP

               GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdr 365
                        ++pres+ r+++E+ l+gr++ nvvaceg +  er e++++W++r ++aG++++pl+ ++++  k  +r ++ + + + e+ ++l++gW++r
  GRMZM2G425366_P01 433 TMPRESRSRVVLEQGLFGRSALNVVACEGIDLLERPERYRQWQARNQRAGLRQLPLQPTIVSILKEEVRSCHHRDFLICEDGKWLLQGWMGR 524
                        ************************************************************************999***************** PP

               GRAS 366 pLvsvSaW 373
                         L++ S W
  GRMZM2G425366_P01 525 ILFAQSTW 532
                        ******** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098514.874192344IPR005202Transcription factor GRAS
PfamPF035141.7E-19219341IPR005202Transcription factor GRAS
PfamPF035144.7E-39342532IPR005202Transcription factor GRAS
PROSITE profilePS5098518.155350513IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MATSPEQFFV KDVSSTQQGG GCHHHAVPSD EDMMLPYISR MLMEDDDDAA DDNKLSHHPA  60
LLQVEEPFAQ ILSSPSLGGI SEDVLQGGGS DGRTPDYSSS SRSRCASAAG AFLELEDDVL  120
PGDDSGFMVG RESSVLSKKR YASRDDGSLE EEVVTRRSKA DKDTCAHDML EDMMLSGHET  180
YIRDMEKLRI AMANEKSRSN GKGGGGSKKA SFCNVVDIRS LLILCAHAVA ANDGARAREL  240
LKQINQHASE TGDATQRLAQ CFARGLEARL LGTGSQLWQL QLASDRLSTA EFLKAHNLYM  300
AACGFNMAVI GFSTMTIMQA MAMAGRRSLH IVDYGMRFGF QKKWELVCNE DLDRRPDEVL  360
VVNDHFNFST LMDESVFFDN PSPRDTVLLN VRKMRPDVFI QSILNNSNGC SYLSRFREAL  420
FYYTAMFDIF DATMPRESRS RVVLEQGLFG RSALNVVACE GIDLLERPER YRQWQARNQR  480
AGLRQLPLQP TIVSILKEEV RSCHHRDFLI CEDGKWLLQG WMGRILFAQS TWVAEDSSYS  540
E
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G425366
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G425366_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978278.10.0PREDICTED: scarecrow-like protein 33
TrEMBLA0A096TQQ90.0A0A096TQQ9_MAIZE; Uncharacterized protein
STRINGGRMZM2G425366_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1981422
MonocotsOGMP23131297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.12e-80GRAS family protein