PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G424261_P01
Common NameZEAMMB73_459327
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family TCP
Protein Properties Length: 162aa    MW: 17274.4 Da    PI: 6.0784
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G424261_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP36.61.5e-111001373666
                TCP  36 qdeLGfdkdsktieWLlqqakpaikeltgt.......s 66 
                        qd+LGfdk+skt++WLl q+kp i+ l++        +
  GRMZM2G424261_P01 100 QDRLGFDKASKTLNWLLAQSKPPIDCLVDAadqvavvT 137
                        9************************9999844444430 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.1E-8100132IPR005333Transcription factor, TCP
PROSITE profilePS513698.52100126IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MPPHLRHAFS AEGVGAGASS PYSSDISLDT DQRSTSTRVF HSIHAPSFSL SSDVPFVFAA  60
FALFFLPNLL PLPTVAAASR PTLVNADVYV FVVSFSDNEQ DRLGFDKASK TLNWLLAQSK  120
PPIDCLVDAA DQVAVVTGGR PTLVKGREQG SNSSTCCLTD SR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.398041e-81tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G424261
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G424261_P01
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9614982e-79EU961498.1 Zea mays clone 235951 teosinte branched1 protein mRNA, complete cds.
GenBankKJ7277622e-79KJ727762.1 Zea mays clone pUT5707 TCP transcription factor (TCP11) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D6J6B62e-99A0A1D6J6B6_MAIZE; Chaperone protein dnaJ 6
STRINGGRMZM2G424261_P011e-114(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40523172
Representative plantOGRP18015163