PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G423393_P01
Common NameABI26, ZEAMMB73_040575
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family B3
Protein Properties Length: 296aa    MW: 33068.1 Da    PI: 8.9124
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G423393_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.13.3e-2379172187
                        EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                        f kvltpsdv+k++rl +p+++ae +         gg    ++ l +ed ++g +W+++++ +++s++yvltkGW+ F k+++Lk gD++ F
  GRMZM2G423393_P01  79 FSKVLTPSDVGKLNRLLIPRQCAEGFfpmisevksGG---DDIFLNFEDtSTGLVWRFRFCLWNNSKTYVLTKGWSVFIKEKNLKKGDILSF 167
                        88*********************999**996544322...3566788887778*************************************** PP

                        EE-SS CS
                 B3  83 kldgr 87 
                        ++d +
  GRMZM2G423393_P01 168 YRDAS 172
                        *7754 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-3268181IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.54E-2677184IPR015300DNA-binding pseudobarrel domain
CDDcd100173.10E-2278184No hitNo description
PROSITE profilePS5086312.57679188IPR003340B3 DNA binding domain
SMARTSM010195.7E-1879188IPR003340B3 DNA binding domain
PfamPF023622.2E-2079173IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MAFSARTISR EMEVQMGKAP PCLNPFLMVN PLLPPQHVSP WSSKSVPVFQ FGMTNGHGAL  60
DLCEESKRAR KVVHLEYLFS KVLTPSDVGK LNRLLIPRQC AEGFFPMISE VKSGGDDIFL  120
NFEDTSTGLV WRFRFCLWNN SKTYVLTKGW SVFIKEKNLK KGDILSFYRD ASKSIRTNHL  180
FIHIKPHTGT MPLPHHVPSP VFSPSGMVID DQVHDSLNIG KSHGIAPSWK PLSFGSGELM  240
PSTNPTPQQT TFPESTSLAN SIVMAEKHLR LFGVDIDIPT HRYGDESSDG FIKNIA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-317619011120DNA-binding protein RAV1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G423393
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G423393_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269640.0KJ726964.1 Zea mays clone pUT3664 ABI3VP1 transcription factor (ABI26) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002445252.11e-139hypothetical protein SORBIDRAFT_07g006880
TrEMBLK7UER20.0K7UER2_MAIZE; ABI3VP1 transcription factor
STRINGGRMZM2G423393_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1988622
MonocotsOGMP16167813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.18e-37B3 family protein