PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G421212_P01
Common NameLOC103641907, ZEAMMB73_136468, Zm.86758
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GATA
Protein Properties Length: 543aa    MW: 59901.7 Da    PI: 7.1249
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G421212_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.82.2e-16741135
               GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                       C++Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  GRMZM2G421212_P01  7 CRHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGS 41
                       ****************55555***********997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.1E-10153IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-11546No hitNo description
CDDcd002024.20E-15640No hitNo description
PROSITE profilePS5011411.345740IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.4E-12741IPR013088Zinc finger, NHR/GATA-type
PfamPF003203.4E-14741IPR000679Zinc finger, GATA-type
PfamPF139191.2E-10272368IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006339anatomyjuvenile vascular leaf
PO:0009025anatomyvascular leaf
PO:0001052developmental stagevascular leaf expansion stage
PO:0007065developmental stageLP.05 five leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MGKQGPCRHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG SLANYTPMHR NDNIDDDEPR  60
VSKLKPPTSK LKSQKKKTNH IIMENGPFSG QNFRKMGDVD PSYRSSSGSA VSYSESCAPY  120
GAADASEMTG SAQSHAWESL VPSRKRSCVT RPKPSPVEKL AKELNYIMHE EKLYYLSESS  180
EEDLLYHSET PIGSFEIGSG SVLLRHPNSK SLEEESKTSS IPADNKSYIT SESYSDSASF  240
VVHSGNKAAI NLNLPTARPK KSPLHMEDNA RRDKLHYENQ HVLESVDSPL VSVDLEDVIN  300
YTNFMKYLTK EDRRQLLKFL PPVDSLTPPE SLRSMFSCIQ FSDAIDSYQM LLREGILDPS  360
LCGDEEWKKV KTLALTNLTK CSWLECYKQK KGAKETGGVG GISGPEGFTK STMKPLKRPR  420
DTHFQSDAEL DGTMRSPLRV LKSGALALQF ESSSLPKSGY ATEDSTCTGG APNLFMLPLE  480
KLPLLVPSQY AVSDQDLLLE IPLNARHPEA ELLCQPSQLM SSITSSSTSM GGVAEGEGYL  540
KQP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.302100.0meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G421212
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G421212_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0424870.0BT042487.1 Zea mays full-length cDNA clone ZM_BFb0296I21 mRNA, complete cds.
GenBankEU9621170.0EU962117.1 Zea mays clone 240325 GATA transcription factor 29 mRNA, complete cds.
GenBankKJ7268460.0KJ726846.1 Zea mays clone pUT3386 C2C2-GATA transcription factor (GATA5) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008663440.10.0GATA transcription factor 26
TrEMBLA0A1D6JBJ00.0A0A1D6JBJ0_MAIZE; GATA transcription factor 26
STRINGGRMZM2G421212_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44243464
Representative plantOGRP27491530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.35e-79GATA transcription factor 26