PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G412430_P02
Common Nameumc2227
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 280aa    MW: 29866.3 Da    PI: 4.7547
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G412430_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.75.7e-052292681054
                        HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        rrRR+ri +  + Lr ++P          + a++L +A+ Y+++L
  GRMZM2G412430_P02 229 RRRRERIQETVAALRNMVPGG---I--AKDAAAVLDEAICYLQYL 268
                        9******************96...1..24679***********99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.702219268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-8229276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-7229276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MGDKVNPWCH CHWHNPAWKS DTESCAGDLH PPDAGHLTAD SVALAPILEF PPPYPSRKRP  60
LVLYQKEKRA PVLPAPLPSK GPPPLDPVPE LQGSNETDVT DAGAGEETEE GMHENRDEIN  120
ALLDTDRQSG GAALSVESVA SAGAGAGAAP PPAAKKRRLS SCTDKSVVDT ASSAARPPER  180
SMEQEQRVEL ANDRDAQSCC VGEVESGRRF ALGEAEAEAA EGDSPDEQRR RRERIQETVA  240
ALRNMVPGGI AKDAAAVLDE AICYLQYLKL KVKTLGAVSL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.186260.0ear| meristem| root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G412430
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G412430_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9561840.0EU956184.1 Zea mays clone 1558574 hypothetical protein mRNA, complete cds.
GenBankBT0668980.0BT066898.1 Zea mays full-length cDNA clone ZM_BFb0087E07 mRNA, complete cds.
GenBankBT0404650.0BT040465.1 Zea mays full-length cDNA clone ZM_BFc0095L04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001143014.10.0uncharacterized protein LOC100275478
RefseqXP_008669559.10.0PREDICTED: uncharacterized protein LOC100275478 isoform X1
TrEMBLB4FTM70.0B4FTM7_MAIZE; Uncharacterized protein
STRINGGRMZM2G412430_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1276534
MonocotsOGMP100311820
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]