PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G405699_P01
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family B3
Protein Properties Length: 316aa    MW: 34378.2 Da    PI: 6.3879
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G405699_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.15.8e-12236316379
                        EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-E CS
                 B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDf 79 
                        k+lt+sdv +sgr+vlpkk ae+    +++  +  l++ d      W++k+++  ++ks++y+l+    eFvk +gL++gD+
  GRMZM2G405699_P01 236 KELTKSDVANSGRIVLPKKDAEAGlpPLVQGDPLILQMDDmVLPIIWKFKYRFwpNNKSRMYILE-AAGEFVKTHGLQAGDT 316
                        899******************88899666666656676664445*******99888888888888.99*************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.83E-16233316No hitNo description
SuperFamilySSF1019365.1E-13233316IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.9E-17233316IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.698234316IPR003340B3 DNA binding domain
PfamPF023622.1E-8236316IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MGQMGGPDGD GPHHQYHYQA LLAAVQNPSQ GLHVPLHAGA GAPAAGPGPR PGADADASST  60
HNANATPHSQ PPRAFTDWSA SNSAFAAQPA PATTNTPFHY NLSQSYALWT HYMLNKNVSY  120
STYSTPHEPL RHTHIPDKYS GCAFSLGFDS FTTMSLGPNI CANMTPMERS ISAKEPENSE  180
DLPTVVRSSD EMDTRNSGDV RRDTVDTLPE SKQSHESCAS VSNKFDSGEY QVILRKELTK  240
SDVANSGRIV LPKKDAEAGL PPLVQGDPLI LQMDDMVLPI IWKFKYRFWP NNKSRMYILE  300
AAGEFVKTHG LQAGDT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.984840.0ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G405699
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G405699_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9715150.0EU971515.1 Zea mays clone 366455 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008648336.10.0PREDICTED: B3 domain-containing protein IDEF1-like
SwissprotQ6Z1Z31e-100IDEF1_ORYSJ; B3 domain-containing protein IDEF1
TrEMBLA0A096TM110.0A0A096TM11_MAIZE; Uncharacterized protein
STRINGGRMZM2G405699_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7881766
MonocotsOGMP113462831
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28300.14e-28B3 family protein