PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G386674_P01
Common NameLOC100283251, Zm.3904
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family LBD
Protein Properties Length: 320aa    MW: 34029.2 Da    PI: 6.0473
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G386674_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26089.83.3e-284106197
             DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqq 86 
                        +C++C+vlr++C++ C+++p++     p++q++++ +++k++G++ +l+ll+a+p++  r+++++sl+yeA+ r+ +PvyG+vg++++ ++q
  GRMZM2G386674_P01   4 SCNGCRVLRKGCSDACTIRPCLqwidsPEAQANATVFLAKFYGRAGLLNLLAAAPDDAaRPAVFRSLLYEACGRIVNPVYGSVGLLWSRRWQ 95 
                        6*****************************************************88887********************************* PP

             DUF260  87 leqlkaelall 97 
                         +  ++e++l 
  GRMZM2G386674_P01  96 SCVDAVEAVLK 106
                        **999988776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.9163110IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-224102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSDACT IRPCLQWIDS PEAQANATVF LAKFYGRAGL LNLLAAAPDD  60
AARPAVFRSL LYEACGRIVN PVYGSVGLLW SRRWQSCVDA VEAVLKGDPV VQVDAGSEAA  120
AAPAPLLGAS RPAAPPAAYD IRHVARDPDA VAAADLLRVA RGGGRRRFKR AGSSSNACKA  180
KPLKGKASSN ERASPSPTQR QHQQETEELE LEPVPMVVEL EHGEESAGSH DHHHHLQPQG  240
SEEDTDVEAA SHVSQAEAEP PVSSQSQALV ADQEGEEVRL ELTLGFEPVV RQQPRLSCCD  300
SSGLSAASSL IGLRLQLPAA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.39040.0ear| endosperm| pollen| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G386674
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G386674_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9635960.0EU963596.1 Zea mays clone 264458 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001149625.20.0seed specific protein Bn15D17A
TrEMBLA0A1D6M9Z40.0A0A1D6M9Z4_MAIZE; Seed specific protein Bn15D17A
STRINGGRMZM2G386674_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.19e-50LOB domain-containing protein 41
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]